Hb_031527_050

Information

Type -
Description -
Location Contig31527: 24993-26429
Sequence    

Annotation

kegg
ID rcu:RCOM_0112350
description hypothetical protein
nr
ID XP_011038407.1
description PREDICTED: universal stress protein A-like protein [Populus euphratica]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9SR93
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0112350 PE=4 SV=1
Gene Ontology
ID GO:0005886
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33255: 19942-24162 , PASA_asmbl_33257: 25077-26438
cDNA
(Sanger)
(ID:Location)		 021_J11.ab1: 25077-26438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_050 0.0 - - PREDICTED: universal stress protein A-like protein [Populus euphratica]
2 Hb_004116_040 0.1284570788 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
3 Hb_003086_110 0.1301556945 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
4 Hb_000101_170 0.134884737 - - -
5 Hb_003125_040 0.1386420917 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
6 Hb_008016_010 0.1405606428 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
7 Hb_000479_180 0.1414876274 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001047_010 0.1419780593 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003086_020 0.1441210554 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
10 Hb_118977_020 0.1443954502 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
11 Hb_000608_420 0.148061967 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
12 Hb_005348_080 0.148982055 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
13 Hb_000272_100 0.1490193055 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
14 Hb_000061_330 0.1496328638 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
15 Hb_004607_140 0.1502228362 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
16 Hb_005941_010 0.1503373601 - - PREDICTED: protein SAND [Jatropha curcas]
17 Hb_007166_050 0.1505888113 - - -
18 Hb_007632_090 0.1508723586 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
19 Hb_023226_090 0.1512363085 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
20 Hb_007919_050 0.15170262 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_050 Hb_031527_050 Hb_004116_040 Hb_004116_040 Hb_031527_050--Hb_004116_040 Hb_003086_110 Hb_003086_110 Hb_031527_050--Hb_003086_110 Hb_000101_170 Hb_000101_170 Hb_031527_050--Hb_000101_170 Hb_003125_040 Hb_003125_040 Hb_031527_050--Hb_003125_040 Hb_008016_010 Hb_008016_010 Hb_031527_050--Hb_008016_010 Hb_000479_180 Hb_000479_180 Hb_031527_050--Hb_000479_180 Hb_003086_020 Hb_003086_020 Hb_004116_040--Hb_003086_020 Hb_001235_070 Hb_001235_070 Hb_004116_040--Hb_001235_070 Hb_002025_320 Hb_002025_320 Hb_004116_040--Hb_002025_320 Hb_000608_420 Hb_000608_420 Hb_004116_040--Hb_000608_420 Hb_148209_120 Hb_148209_120 Hb_004116_040--Hb_148209_120 Hb_004116_040--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_003086_110--Hb_003086_020 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_000318_380 Hb_000318_380 Hb_000101_170--Hb_000318_380 Hb_000617_020 Hb_000617_020 Hb_000101_170--Hb_000617_020 Hb_000152_430 Hb_000152_430 Hb_000101_170--Hb_000152_430 Hb_000101_170--Hb_003125_040 Hb_060809_010 Hb_060809_010 Hb_000101_170--Hb_060809_010 Hb_000317_430 Hb_000317_430 Hb_000101_170--Hb_000317_430 Hb_002942_020 Hb_002942_020 Hb_003125_040--Hb_002942_020 Hb_003125_040--Hb_060809_010 Hb_006569_020 Hb_006569_020 Hb_003125_040--Hb_006569_020 Hb_000928_240 Hb_000928_240 Hb_003125_040--Hb_000928_240 Hb_003125_040--Hb_000317_430 Hb_118419_020 Hb_118419_020 Hb_003125_040--Hb_118419_020 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_098709_010 Hb_098709_010 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080 Hb_004595_020 Hb_004595_020 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000634_050 Hb_000634_050 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.813 10.728 1.72064 33.5177 107.515 112.631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.956 90.231 63.6154 35.5392 4.11454

CAGE analysis