Hb_025469_050

Information

Type -
Description -
Location Contig25469: 34826-42785
Sequence    

Annotation

kegg
ID tcc:TCM_037113
description Domain of Uncharacterized protein function (DUF298) isoform 2
nr
ID XP_012071456.1
description PREDICTED: DCN1-like protein 4 isoform X1 [Jatropha curcas]
swissprot
ID Q8CCA0
description DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1
trembl
ID A0A067L3H3
description Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_03992 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26590: 34961-36415 , PASA_asmbl_26591: 37800-38509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025469_050 0.0 - - PREDICTED: DCN1-like protein 4 isoform X1 [Jatropha curcas]
2 Hb_001699_040 0.108293928 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
3 Hb_032202_090 0.11798967 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
4 Hb_001279_070 0.119467237 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
5 Hb_007432_080 0.1229366868 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
6 Hb_000120_760 0.1238305739 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
7 Hb_003687_110 0.1267833633 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
8 Hb_168054_010 0.1300218936 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
9 Hb_010180_020 0.130023649 - - hypothetical protein glysoja_030394 [Glycine soja]
10 Hb_003874_020 0.1305139357 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
11 Hb_004502_020 0.1312035555 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
12 Hb_000317_340 0.1320428921 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010407_040 0.1328398873 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
14 Hb_018133_060 0.1341353707 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
15 Hb_004738_080 0.1341949901 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
16 Hb_001604_080 0.1345557109 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
17 Hb_182305_020 0.135146815 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
18 Hb_001377_150 0.1361061105 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
19 Hb_001278_110 0.1380668814 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
20 Hb_000457_110 0.1387445573 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_025469_050 Hb_025469_050 Hb_001699_040 Hb_001699_040 Hb_025469_050--Hb_001699_040 Hb_032202_090 Hb_032202_090 Hb_025469_050--Hb_032202_090 Hb_001279_070 Hb_001279_070 Hb_025469_050--Hb_001279_070 Hb_007432_080 Hb_007432_080 Hb_025469_050--Hb_007432_080 Hb_000120_760 Hb_000120_760 Hb_025469_050--Hb_000120_760 Hb_003687_110 Hb_003687_110 Hb_025469_050--Hb_003687_110 Hb_010180_020 Hb_010180_020 Hb_001699_040--Hb_010180_020 Hb_001936_080 Hb_001936_080 Hb_001699_040--Hb_001936_080 Hb_010180_010 Hb_010180_010 Hb_001699_040--Hb_010180_010 Hb_000457_110 Hb_000457_110 Hb_001699_040--Hb_000457_110 Hb_001998_230 Hb_001998_230 Hb_001699_040--Hb_001998_230 Hb_168054_010 Hb_168054_010 Hb_001699_040--Hb_168054_010 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_001279_070--Hb_007432_080 Hb_000163_160 Hb_000163_160 Hb_007432_080--Hb_000163_160 Hb_007432_080--Hb_010180_020 Hb_001279_310 Hb_001279_310 Hb_007432_080--Hb_001279_310 Hb_004306_020 Hb_004306_020 Hb_007432_080--Hb_004306_020 Hb_007432_080--Hb_168054_010 Hb_000120_760--Hb_032202_090 Hb_001604_080 Hb_001604_080 Hb_000120_760--Hb_001604_080 Hb_000120_760--Hb_168054_010 Hb_000887_020 Hb_000887_020 Hb_000120_760--Hb_000887_020 Hb_000120_760--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000120_760--Hb_000676_290 Hb_002874_190 Hb_002874_190 Hb_003687_110--Hb_002874_190 Hb_165132_010 Hb_165132_010 Hb_003687_110--Hb_165132_010 Hb_003687_110--Hb_010180_020 Hb_003687_110--Hb_001604_080 Hb_002007_060 Hb_002007_060 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6585 0.17149 1.21327 1.21352 1.43425 2.96667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47608 3.91955 1.19237 0.337084 0.885263

CAGE analysis