Hb_015401_030

Information

Type -
Description -
Location Contig15401: 25049-28223
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13254: 25503-25700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015401_030 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_005914_090 0.1558953279 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
3 Hb_113216_010 0.1696669603 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_003299_090 0.1716569497 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
5 Hb_057490_010 0.1729318201 - - PREDICTED: mannose-1-phosphate guanyltransferase alpha [Jatropha curcas]
6 Hb_001523_010 0.1743973821 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
7 Hb_001439_180 0.1745657335 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
8 Hb_000076_290 0.1759697384 - - translation factor sui1, putative [Ricinus communis]
9 Hb_002270_010 0.1773224467 - - Chaperone protein dnaJ, putative [Ricinus communis]
10 Hb_002675_190 0.1780909984 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_023327_030 0.1786530047 - - osmotin-like protein [Hevea brasiliensis]
12 Hb_000466_060 0.1788256083 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_000016_180 0.178859457 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_025048_040 0.1790576275 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
15 Hb_005635_010 0.1797383812 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
16 Hb_006723_020 0.1798325221 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
17 Hb_000732_020 0.1801736729 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
18 Hb_013753_010 0.180185996 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
19 Hb_000392_100 0.1829272372 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
20 Hb_000331_480 0.1830122594 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_015401_030 Hb_015401_030 Hb_005914_090 Hb_005914_090 Hb_015401_030--Hb_005914_090 Hb_113216_010 Hb_113216_010 Hb_015401_030--Hb_113216_010 Hb_003299_090 Hb_003299_090 Hb_015401_030--Hb_003299_090 Hb_057490_010 Hb_057490_010 Hb_015401_030--Hb_057490_010 Hb_001523_010 Hb_001523_010 Hb_015401_030--Hb_001523_010 Hb_001439_180 Hb_001439_180 Hb_015401_030--Hb_001439_180 Hb_005914_090--Hb_003299_090 Hb_000453_080 Hb_000453_080 Hb_005914_090--Hb_000453_080 Hb_012016_020 Hb_012016_020 Hb_005914_090--Hb_012016_020 Hb_000347_150 Hb_000347_150 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_139859_010 Hb_139859_010 Hb_005914_090--Hb_139859_010 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_003299_090--Hb_012016_020 Hb_057490_010--Hb_025048_040 Hb_003995_010 Hb_003995_010 Hb_057490_010--Hb_003995_010 Hb_000814_090 Hb_000814_090 Hb_057490_010--Hb_000814_090 Hb_001278_060 Hb_001278_060 Hb_057490_010--Hb_001278_060 Hb_003716_020 Hb_003716_020 Hb_057490_010--Hb_003716_020 Hb_000213_070 Hb_000213_070 Hb_057490_010--Hb_000213_070 Hb_000466_060 Hb_000466_060 Hb_001523_010--Hb_000466_060 Hb_000172_530 Hb_000172_530 Hb_001523_010--Hb_000172_530 Hb_001523_010--Hb_113216_010 Hb_005016_030 Hb_005016_030 Hb_001523_010--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_001523_010--Hb_000270_450 Hb_001825_010 Hb_001825_010 Hb_001523_010--Hb_001825_010 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25479 1.954 0 1.54586 3.86959 7.27322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2226 0.686461 1.82548 1.28802 0

CAGE analysis