Hb_012132_060

Information

Type -
Description -
Location Contig12132: 59728-60147
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02700g
description hypothetical protein
nr
ID XP_012086432.1
description PREDICTED: centromere protein V [Jatropha curcas]
swissprot
ID Q9CXS4
description Centromere protein V OS=Mus musculus GN=Cenpv PE=2 SV=2
trembl
ID A0A067K0N7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22527 PE=4 SV=1
Gene Ontology
ID GO:0016846
description centromere protein v

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06540: 57101-60312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012132_060 0.0 - - PREDICTED: centromere protein V [Jatropha curcas]
2 Hb_001989_090 0.1235146103 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
3 Hb_011942_090 0.1288454164 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
4 Hb_001234_100 0.1319757405 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
5 Hb_000120_460 0.1361375544 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
6 Hb_000976_170 0.1404341395 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
7 Hb_001390_130 0.1404503 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
8 Hb_000346_040 0.1417127843 - - -
9 Hb_002183_060 0.1432386759 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_000398_040 0.1437739989 - - Auxin response factor, putative [Ricinus communis]
11 Hb_001235_030 0.1456634442 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
12 Hb_000453_120 0.1457489376 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
13 Hb_000291_080 0.1459424364 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_006420_100 0.1480476265 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
15 Hb_005551_040 0.1491937676 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
16 Hb_002110_200 0.1494548255 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_114336_020 0.1494870088 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
18 Hb_025240_040 0.1511038079 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
19 Hb_021443_100 0.1511807196 - - -
20 Hb_005305_150 0.1526205186 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_012132_060 Hb_012132_060 Hb_001989_090 Hb_001989_090 Hb_012132_060--Hb_001989_090 Hb_011942_090 Hb_011942_090 Hb_012132_060--Hb_011942_090 Hb_001234_100 Hb_001234_100 Hb_012132_060--Hb_001234_100 Hb_000120_460 Hb_000120_460 Hb_012132_060--Hb_000120_460 Hb_000976_170 Hb_000976_170 Hb_012132_060--Hb_000976_170 Hb_001390_130 Hb_001390_130 Hb_012132_060--Hb_001390_130 Hb_000735_090 Hb_000735_090 Hb_001989_090--Hb_000735_090 Hb_007065_010 Hb_007065_010 Hb_001989_090--Hb_007065_010 Hb_000836_470 Hb_000836_470 Hb_001989_090--Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_001989_090--Hb_001728_030 Hb_005305_150 Hb_005305_150 Hb_001989_090--Hb_005305_150 Hb_002798_020 Hb_002798_020 Hb_001989_090--Hb_002798_020 Hb_000676_150 Hb_000676_150 Hb_011942_090--Hb_000676_150 Hb_000291_080 Hb_000291_080 Hb_011942_090--Hb_000291_080 Hb_001414_030 Hb_001414_030 Hb_011942_090--Hb_001414_030 Hb_000820_090 Hb_000820_090 Hb_011942_090--Hb_000820_090 Hb_006420_100 Hb_006420_100 Hb_011942_090--Hb_006420_100 Hb_002111_040 Hb_002111_040 Hb_011942_090--Hb_002111_040 Hb_000421_220 Hb_000421_220 Hb_001234_100--Hb_000421_220 Hb_025240_040 Hb_025240_040 Hb_001234_100--Hb_025240_040 Hb_003502_090 Hb_003502_090 Hb_001234_100--Hb_003502_090 Hb_003697_040 Hb_003697_040 Hb_001234_100--Hb_003697_040 Hb_001205_150 Hb_001205_150 Hb_001234_100--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_001234_100--Hb_000479_190 Hb_000120_460--Hb_000976_170 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_000976_170--Hb_108350_010 Hb_002183_090 Hb_002183_090 Hb_000976_170--Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_000976_170--Hb_000085_050 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_001390_130--Hb_000291_080 Hb_001390_130--Hb_002111_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56452 4.12007 10.4887 16.6534 18.9302 28.8457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0879 47.1161 33.6189 20.9234 17.3356

CAGE analysis