Hb_006573_270

Information

Type -
Description -
Location Contig6573: 172649-173284
Sequence    

Annotation

kegg
ID rcu:RCOM_1581550
description hypothetical protein
nr
ID XP_002513626.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIQ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000291_170 0.0794175145 - - PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
3 Hb_107495_060 0.1305137302 - - Cell division protein kinase, putative [Ricinus communis]
4 Hb_180695_010 0.1593768161 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
5 Hb_087314_010 0.1619452977 - - -
6 Hb_000172_310 0.1647341474 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
7 Hb_072670_010 0.1707059781 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
8 Hb_000373_260 0.1714789005 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
9 Hb_033772_040 0.1849729575 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015934_100 0.1870651118 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
11 Hb_005214_050 0.1883121824 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
12 Hb_000975_130 0.1951270906 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
13 Hb_011355_020 0.1971298238 - - extensin, proline-rich protein, putative [Ricinus communis]
14 Hb_000163_040 0.1973205185 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
15 Hb_096878_010 0.1975147126 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
16 Hb_005736_010 0.1999323556 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
17 Hb_000007_070 0.2014159093 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
18 Hb_004218_220 0.2029205975 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_148914_020 0.2031490588 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
20 Hb_000128_090 0.2038994996 - - Reticuline oxidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006573_270 Hb_006573_270 Hb_000291_170 Hb_000291_170 Hb_006573_270--Hb_000291_170 Hb_107495_060 Hb_107495_060 Hb_006573_270--Hb_107495_060 Hb_180695_010 Hb_180695_010 Hb_006573_270--Hb_180695_010 Hb_087314_010 Hb_087314_010 Hb_006573_270--Hb_087314_010 Hb_000172_310 Hb_000172_310 Hb_006573_270--Hb_000172_310 Hb_072670_010 Hb_072670_010 Hb_006573_270--Hb_072670_010 Hb_000291_170--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_000291_170--Hb_033772_040 Hb_000291_170--Hb_072670_010 Hb_000291_170--Hb_180695_010 Hb_000291_170--Hb_087314_010 Hb_107495_060--Hb_072670_010 Hb_107495_060--Hb_087314_010 Hb_000373_260 Hb_000373_260 Hb_107495_060--Hb_000373_260 Hb_107495_060--Hb_180695_010 Hb_005736_010 Hb_005736_010 Hb_107495_060--Hb_005736_010 Hb_107495_060--Hb_033772_040 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_180695_010--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_180695_010--Hb_048987_020 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_180695_010--Hb_033772_040 Hb_087314_010--Hb_048987_020 Hb_087314_010--Hb_072670_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_004218_220 Hb_004218_220 Hb_000172_310--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_000172_310--Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_000172_310--Hb_000635_190 Hb_000172_310--Hb_006721_060 Hb_055147_020 Hb_055147_020 Hb_000172_310--Hb_055147_020 Hb_004096_140 Hb_004096_140 Hb_000172_310--Hb_004096_140 Hb_010926_020 Hb_010926_020 Hb_072670_010--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_072670_010--Hb_057018_010 Hb_072670_010--Hb_005736_010 Hb_148914_020 Hb_148914_020 Hb_072670_010--Hb_148914_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.373251 0.505131 1.72075 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0926988 0 0 0.357392 0

CAGE analysis