Hb_000291_170

Information

Type -
Description -
Location Contig291: 141545-144702
Sequence    

Annotation

kegg
ID rcu:RCOM_1033210
description KOM, putative (EC:3.4.21.105)
nr
ID XP_012078131.1
description PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067KLS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12021 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive rhomboid protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_170 0.0 - - PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
2 Hb_006573_270 0.0794175145 - - conserved hypothetical protein [Ricinus communis]
3 Hb_107495_060 0.1785882677 - - Cell division protein kinase, putative [Ricinus communis]
4 Hb_033772_040 0.1915285096 - - conserved hypothetical protein [Ricinus communis]
5 Hb_072670_010 0.1970659677 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
6 Hb_180695_010 0.2011649658 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
7 Hb_087314_010 0.2013130376 - - -
8 Hb_000015_140 0.2040878745 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
9 Hb_000373_260 0.2080264364 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
10 Hb_002122_060 0.210944976 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
11 Hb_034310_020 0.2110154731 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
12 Hb_005736_010 0.2132240135 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
13 Hb_010926_020 0.2151082179 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
14 Hb_000563_140 0.2153531778 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_000163_040 0.2206913563 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
16 Hb_004319_100 0.2209407752 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
17 Hb_005214_050 0.2212856941 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
18 Hb_048987_020 0.2223530798 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
19 Hb_000313_280 0.2252992346 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
20 Hb_000504_100 0.2291802865 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000291_170 Hb_000291_170 Hb_006573_270 Hb_006573_270 Hb_000291_170--Hb_006573_270 Hb_107495_060 Hb_107495_060 Hb_000291_170--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_000291_170--Hb_033772_040 Hb_072670_010 Hb_072670_010 Hb_000291_170--Hb_072670_010 Hb_180695_010 Hb_180695_010 Hb_000291_170--Hb_180695_010 Hb_087314_010 Hb_087314_010 Hb_000291_170--Hb_087314_010 Hb_006573_270--Hb_107495_060 Hb_006573_270--Hb_180695_010 Hb_006573_270--Hb_087314_010 Hb_000172_310 Hb_000172_310 Hb_006573_270--Hb_000172_310 Hb_006573_270--Hb_072670_010 Hb_107495_060--Hb_072670_010 Hb_107495_060--Hb_087314_010 Hb_000373_260 Hb_000373_260 Hb_107495_060--Hb_000373_260 Hb_107495_060--Hb_180695_010 Hb_005736_010 Hb_005736_010 Hb_107495_060--Hb_005736_010 Hb_107495_060--Hb_033772_040 Hb_034310_020 Hb_034310_020 Hb_033772_040--Hb_034310_020 Hb_004319_100 Hb_004319_100 Hb_033772_040--Hb_004319_100 Hb_004474_020 Hb_004474_020 Hb_033772_040--Hb_004474_020 Hb_001529_010 Hb_001529_010 Hb_033772_040--Hb_001529_010 Hb_010926_020 Hb_010926_020 Hb_033772_040--Hb_010926_020 Hb_004899_380 Hb_004899_380 Hb_033772_040--Hb_004899_380 Hb_072670_010--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_072670_010--Hb_057018_010 Hb_072670_010--Hb_005736_010 Hb_072670_010--Hb_087314_010 Hb_148914_020 Hb_148914_020 Hb_072670_010--Hb_148914_020 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_180695_010--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_180695_010--Hb_048987_020 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_180695_010--Hb_033772_040 Hb_087314_010--Hb_048987_020 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0630284 0.0870198 0.375145 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0360423 0 0 0.056692 0

CAGE analysis