Hb_005784_080

Information

Type -
Description -
Location Contig5784: 101293-104842
Sequence    

Annotation

kegg
ID rcu:RCOM_0069260
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002533407.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8LST2
description Probable serine/threonine-protein kinase WNK7 OS=Arabidopsis thaliana GN=WNK7 PE=2 SV=1
trembl
ID B9T588
description Kinase, putative OS=Ricinus communis GN=RCOM_0069260 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase wnk6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49749: 101319-101703 , PASA_asmbl_49750: 101860-102363 , PASA_asmbl_49751: 102854-103492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_080 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001341_050 0.1045798555 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
3 Hb_000176_110 0.1053629377 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
4 Hb_003352_050 0.1106675928 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
5 Hb_033642_020 0.1107910265 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
6 Hb_000997_020 0.1141207582 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
7 Hb_000172_120 0.1142589581 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
8 Hb_000209_090 0.1153327726 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
9 Hb_009421_100 0.1184664092 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
10 Hb_003453_020 0.1188156021 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
11 Hb_000347_080 0.1188868333 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
12 Hb_002377_040 0.1210213642 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_004502_030 0.1219279681 - - unknown [Populus trichocarpa]
14 Hb_000372_040 0.1228769374 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_002955_010 0.1228958159 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
16 Hb_000156_140 0.1239834839 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
17 Hb_004032_050 0.1241070773 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
18 Hb_001956_120 0.1245880978 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_340 0.1265865179 - - protein with unknown function [Ricinus communis]
20 Hb_006922_080 0.1279565473 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]

Gene co-expression network

sample Hb_005784_080 Hb_005784_080 Hb_001341_050 Hb_001341_050 Hb_005784_080--Hb_001341_050 Hb_000176_110 Hb_000176_110 Hb_005784_080--Hb_000176_110 Hb_003352_050 Hb_003352_050 Hb_005784_080--Hb_003352_050 Hb_033642_020 Hb_033642_020 Hb_005784_080--Hb_033642_020 Hb_000997_020 Hb_000997_020 Hb_005784_080--Hb_000997_020 Hb_000172_120 Hb_000172_120 Hb_005784_080--Hb_000172_120 Hb_007668_040 Hb_007668_040 Hb_001341_050--Hb_007668_040 Hb_000364_060 Hb_000364_060 Hb_001341_050--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_028900_020 Hb_028900_020 Hb_033642_020--Hb_028900_020 Hb_033642_020--Hb_000077_050 Hb_033642_020--Hb_000176_110 Hb_003106_130 Hb_003106_130 Hb_033642_020--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_033642_020--Hb_000025_760 Hb_024714_030 Hb_024714_030 Hb_033642_020--Hb_024714_030 Hb_001741_140 Hb_001741_140 Hb_000997_020--Hb_001741_140 Hb_002997_170 Hb_002997_170 Hb_000997_020--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_000997_020--Hb_003453_020 Hb_007441_340 Hb_007441_340 Hb_000172_120--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_000172_120--Hb_004096_170 Hb_000172_120--Hb_003453_020 Hb_001269_150 Hb_001269_150 Hb_000172_120--Hb_001269_150 Hb_002400_220 Hb_002400_220 Hb_000172_120--Hb_002400_220 Hb_000172_120--Hb_002377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.67629 0.428528 1.80114 0.708911 5.28272 7.13759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38543 2.18258 1.63075 1.10732 0.399858

CAGE analysis