Hb_003435_050

Information

Type -
Description -
Location Contig3435: 77212-81009
Sequence    

Annotation

kegg
ID rcu:RCOM_1353430
description zinc finger protein, putative
nr
ID XP_012082462.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067JZ77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16576 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35886: 76986-77406 , PASA_asmbl_35887: 77427-80964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_050 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
2 Hb_002872_040 0.090541097 - - pumilio, putative [Ricinus communis]
3 Hb_000092_020 0.0962343489 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
4 Hb_027760_080 0.0964292613 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001080_230 0.0979663748 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_008147_040 0.0991041425 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
7 Hb_000574_540 0.1000917912 - - ATP binding protein, putative [Ricinus communis]
8 Hb_005496_110 0.1008659017 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
9 Hb_001006_100 0.1017460695 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
10 Hb_000329_370 0.1018647482 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
11 Hb_001143_250 0.1053069944 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
12 Hb_000418_140 0.1060235002 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
13 Hb_002000_070 0.1061719148 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
14 Hb_000003_190 0.1064643673 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
15 Hb_011537_050 0.1068091338 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
16 Hb_004108_100 0.1068498363 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
17 Hb_000243_250 0.1086756883 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
18 Hb_000291_060 0.1089216531 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
19 Hb_010695_020 0.1101217119 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
20 Hb_000640_310 0.1103567832 - - hypothetical protein JCGZ_14055 [Jatropha curcas]

Gene co-expression network

sample Hb_003435_050 Hb_003435_050 Hb_002872_040 Hb_002872_040 Hb_003435_050--Hb_002872_040 Hb_000092_020 Hb_000092_020 Hb_003435_050--Hb_000092_020 Hb_027760_080 Hb_027760_080 Hb_003435_050--Hb_027760_080 Hb_001080_230 Hb_001080_230 Hb_003435_050--Hb_001080_230 Hb_008147_040 Hb_008147_040 Hb_003435_050--Hb_008147_040 Hb_000574_540 Hb_000574_540 Hb_003435_050--Hb_000574_540 Hb_000243_250 Hb_000243_250 Hb_002872_040--Hb_000243_250 Hb_000003_190 Hb_000003_190 Hb_002872_040--Hb_000003_190 Hb_002872_040--Hb_001080_230 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_002872_040--Hb_000574_540 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_000092_020--Hb_001080_230 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_000640_310 Hb_000640_310 Hb_027760_080--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_027760_080--Hb_001799_050 Hb_008887_020 Hb_008887_020 Hb_027760_080--Hb_008887_020 Hb_027760_080--Hb_000092_020 Hb_022256_060 Hb_022256_060 Hb_027760_080--Hb_022256_060 Hb_001143_250 Hb_001143_250 Hb_027760_080--Hb_001143_250 Hb_001080_230--Hb_000003_190 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_001277_020 Hb_001277_020 Hb_008147_040--Hb_001277_020 Hb_000664_070 Hb_000664_070 Hb_008147_040--Hb_000664_070 Hb_154114_010 Hb_154114_010 Hb_008147_040--Hb_154114_010 Hb_000556_170 Hb_000556_170 Hb_008147_040--Hb_000556_170 Hb_008147_040--Hb_000640_310 Hb_000594_040 Hb_000594_040 Hb_008147_040--Hb_000594_040 Hb_000574_540--Hb_001638_270 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_000574_540--Hb_001080_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8636 46.111 20.435 10.7819 27.3551 25.5076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.919 12.3241 14.7782 17.2256 23.2473

CAGE analysis