Hb_002874_160

Information

Type -
Description -
Location Contig2874: 116091-117706
Sequence    

Annotation

kegg
ID rcu:RCOM_0205190
description hypothetical protein
nr
ID XP_002527988.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0205190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29996: 116034-117721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_116091_010 0.1217443389 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
3 Hb_023768_010 0.1490171418 - - -
4 Hb_002053_020 0.1607779216 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
5 Hb_000120_600 0.1633923998 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
6 Hb_001766_140 0.1706818013 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
7 Hb_002783_210 0.1751352026 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
8 Hb_008566_070 0.1762771216 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004374_170 0.1811674742 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
10 Hb_006187_020 0.1813429612 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]
11 Hb_017549_010 0.1813640525 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
12 Hb_001677_190 0.1817074772 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_004157_060 0.1835907832 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
14 Hb_001953_010 0.1845416318 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
15 Hb_003906_150 0.1849399981 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
16 Hb_000604_050 0.186402977 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
17 Hb_000579_210 0.1864142287 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
18 Hb_045786_010 0.1868710713 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_000120_560 0.1896807816 - - protein with unknown function [Ricinus communis]
20 Hb_027402_110 0.1906208803 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_160 Hb_002874_160 Hb_116091_010 Hb_116091_010 Hb_002874_160--Hb_116091_010 Hb_023768_010 Hb_023768_010 Hb_002874_160--Hb_023768_010 Hb_002053_020 Hb_002053_020 Hb_002874_160--Hb_002053_020 Hb_000120_600 Hb_000120_600 Hb_002874_160--Hb_000120_600 Hb_001766_140 Hb_001766_140 Hb_002874_160--Hb_001766_140 Hb_002783_210 Hb_002783_210 Hb_002874_160--Hb_002783_210 Hb_000504_100 Hb_000504_100 Hb_116091_010--Hb_000504_100 Hb_000714_070 Hb_000714_070 Hb_116091_010--Hb_000714_070 Hb_116091_010--Hb_000120_600 Hb_116091_010--Hb_023768_010 Hb_188281_010 Hb_188281_010 Hb_116091_010--Hb_188281_010 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070 Hb_002186_170 Hb_002186_170 Hb_002053_020--Hb_002186_170 Hb_000175_370 Hb_000175_370 Hb_002053_020--Hb_000175_370 Hb_032299_020 Hb_032299_020 Hb_002053_020--Hb_032299_020 Hb_005784_050 Hb_005784_050 Hb_002053_020--Hb_005784_050 Hb_000429_080 Hb_000429_080 Hb_002053_020--Hb_000429_080 Hb_001856_130 Hb_001856_130 Hb_000120_600--Hb_001856_130 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_000120_600--Hb_001953_010 Hb_017549_010 Hb_017549_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_006187_020 Hb_006187_020 Hb_001766_140--Hb_006187_020 Hb_027402_110 Hb_027402_110 Hb_001766_140--Hb_027402_110 Hb_005695_050 Hb_005695_050 Hb_001766_140--Hb_005695_050 Hb_004157_060 Hb_004157_060 Hb_001766_140--Hb_004157_060 Hb_001766_140--Hb_000429_080 Hb_008200_010 Hb_008200_010 Hb_001766_140--Hb_008200_010 Hb_003529_010 Hb_003529_010 Hb_002783_210--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_002783_210--Hb_001675_260 Hb_000604_050 Hb_000604_050 Hb_002783_210--Hb_000604_050 Hb_008566_070 Hb_008566_070 Hb_002783_210--Hb_008566_070 Hb_002783_210--Hb_017549_010 Hb_005643_080 Hb_005643_080 Hb_002783_210--Hb_005643_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02441 28.7143 14.3131 78.7892 0.158405 0.785619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.373347 0.176118 4.42749 0.333594 5.14396

CAGE analysis