Hb_001828_010

Information

Type -
Description -
Location Contig1828: 3782-5924
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_010 0.0 - - -
2 Hb_000088_030 0.3097023474 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
3 Hb_002483_020 0.3131754864 - - -
4 Hb_184629_010 0.3164601249 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
5 Hb_005892_070 0.3198329762 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
6 Hb_089140_080 0.3220261967 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
7 Hb_004324_020 0.3234230173 - - -
8 Hb_005527_080 0.326055052 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
9 Hb_005590_030 0.326185778 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
10 Hb_022749_030 0.3267560653 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
11 Hb_013124_010 0.3298157617 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
12 Hb_000005_320 0.3300531421 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003702_040 0.3307247238 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_000018_170 0.3321432141 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
15 Hb_173902_040 0.3336423762 - - -
16 Hb_000525_040 0.3339878409 - - -
17 Hb_004659_070 0.3340153618 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
18 Hb_000608_040 0.3362486172 - - -
19 Hb_032844_020 0.3365388422 - - -
20 Hb_001195_590 0.3365986749 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]

Gene co-expression network

sample Hb_001828_010 Hb_001828_010 Hb_000088_030 Hb_000088_030 Hb_001828_010--Hb_000088_030 Hb_002483_020 Hb_002483_020 Hb_001828_010--Hb_002483_020 Hb_184629_010 Hb_184629_010 Hb_001828_010--Hb_184629_010 Hb_005892_070 Hb_005892_070 Hb_001828_010--Hb_005892_070 Hb_089140_080 Hb_089140_080 Hb_001828_010--Hb_089140_080 Hb_004324_020 Hb_004324_020 Hb_001828_010--Hb_004324_020 Hb_140595_010 Hb_140595_010 Hb_000088_030--Hb_140595_010 Hb_000318_260 Hb_000318_260 Hb_000088_030--Hb_000318_260 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_000088_030--Hb_002483_020 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000580_130 Hb_000580_130 Hb_000088_030--Hb_000580_130 Hb_002483_020--Hb_140595_010 Hb_000062_380 Hb_000062_380 Hb_002483_020--Hb_000062_380 Hb_002483_020--Hb_000318_260 Hb_002483_020--Hb_089140_080 Hb_006631_010 Hb_006631_010 Hb_002483_020--Hb_006631_010 Hb_000922_440 Hb_000922_440 Hb_184629_010--Hb_000922_440 Hb_040779_010 Hb_040779_010 Hb_184629_010--Hb_040779_010 Hb_059436_010 Hb_059436_010 Hb_184629_010--Hb_059436_010 Hb_000200_060 Hb_000200_060 Hb_184629_010--Hb_000200_060 Hb_000219_070 Hb_000219_070 Hb_184629_010--Hb_000219_070 Hb_006960_030 Hb_006960_030 Hb_184629_010--Hb_006960_030 Hb_000905_070 Hb_000905_070 Hb_005892_070--Hb_000905_070 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480 Hb_002728_020 Hb_002728_020 Hb_089140_080--Hb_002728_020 Hb_000500_290 Hb_000500_290 Hb_089140_080--Hb_000500_290 Hb_001348_140 Hb_001348_140 Hb_089140_080--Hb_001348_140 Hb_011537_040 Hb_011537_040 Hb_089140_080--Hb_011537_040 Hb_000188_190 Hb_000188_190 Hb_089140_080--Hb_000188_190 Hb_003913_100 Hb_003913_100 Hb_089140_080--Hb_003913_100 Hb_004048_140 Hb_004048_140 Hb_004324_020--Hb_004048_140 Hb_000012_180 Hb_000012_180 Hb_004324_020--Hb_000012_180 Hb_116195_010 Hb_116195_010 Hb_004324_020--Hb_116195_010 Hb_080083_010 Hb_080083_010 Hb_004324_020--Hb_080083_010 Hb_000525_040 Hb_000525_040 Hb_004324_020--Hb_000525_040 Hb_017417_010 Hb_017417_010 Hb_004324_020--Hb_017417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378056 0 0.207533 0 0.432306 0.160233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208263 0 0 0 0

CAGE analysis