Hb_001147_090

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1147: 103043-104842
Sequence    

Annotation

kegg
ID rcu:RCOM_1044250
description DELLA protein GAI1, putative
nr
ID XP_002523464.1
description DELLA protein GAI1, putative [Ricinus communis]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID B9SBU5
description DELLA protein GAI1, putative OS=Ricinus communis GN=RCOM_1044250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001147_090 0.0 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
2 Hb_102129_010 0.0634460206 - - multicopper oxidase, putative [Ricinus communis]
3 Hb_001147_080 0.191102745 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_048476_160 0.2189254061 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
5 Hb_010810_040 0.2206702415 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_000008_040 0.2242610692 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
7 Hb_145708_010 0.2400458022 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
8 Hb_158803_020 0.242890441 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
9 Hb_002078_210 0.2493498838 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
10 Hb_000805_330 0.2502086227 - - PREDICTED: ricin-like [Elaeis guineensis]
11 Hb_000321_010 0.2558009929 - - Chitinase 1 precursor, putative [Ricinus communis]
12 Hb_004961_010 0.2683106279 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_008289_020 0.2683261355 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
14 Hb_021485_010 0.2683360116 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
15 Hb_015183_050 0.2683385249 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
16 Hb_081065_010 0.2685268919 - - hypothetical protein PHAVU_001G084100g, partial [Phaseolus vulgaris]
17 Hb_012753_100 0.2687296112 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005366_030 0.2694427178 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
19 Hb_019135_030 0.269593099 - - putative mitogen-activated protein kinase 1 [Populus trichocarpa]
20 Hb_085910_010 0.2696311559 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001147_090 Hb_001147_090 Hb_102129_010 Hb_102129_010 Hb_001147_090--Hb_102129_010 Hb_001147_080 Hb_001147_080 Hb_001147_090--Hb_001147_080 Hb_048476_160 Hb_048476_160 Hb_001147_090--Hb_048476_160 Hb_010810_040 Hb_010810_040 Hb_001147_090--Hb_010810_040 Hb_000008_040 Hb_000008_040 Hb_001147_090--Hb_000008_040 Hb_145708_010 Hb_145708_010 Hb_001147_090--Hb_145708_010 Hb_102129_010--Hb_048476_160 Hb_102129_010--Hb_001147_080 Hb_102129_010--Hb_145708_010 Hb_158803_020 Hb_158803_020 Hb_102129_010--Hb_158803_020 Hb_102129_010--Hb_010810_040 Hb_002984_020 Hb_002984_020 Hb_001147_080--Hb_002984_020 Hb_001147_080--Hb_048476_160 Hb_003438_060 Hb_003438_060 Hb_001147_080--Hb_003438_060 Hb_000207_420 Hb_000207_420 Hb_001147_080--Hb_000207_420 Hb_048476_160--Hb_158803_020 Hb_048476_160--Hb_003438_060 Hb_000483_230 Hb_000483_230 Hb_048476_160--Hb_000483_230 Hb_000321_010 Hb_000321_010 Hb_010810_040--Hb_000321_010 Hb_007951_090 Hb_007951_090 Hb_010810_040--Hb_007951_090 Hb_001489_040 Hb_001489_040 Hb_010810_040--Hb_001489_040 Hb_009620_010 Hb_009620_010 Hb_010810_040--Hb_009620_010 Hb_002420_030 Hb_002420_030 Hb_010810_040--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_010810_040--Hb_002869_040 Hb_000805_330 Hb_000805_330 Hb_000008_040--Hb_000805_330 Hb_000008_040--Hb_002869_040 Hb_064773_010 Hb_064773_010 Hb_000008_040--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_000008_040--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_000008_040--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_000008_040--Hb_020301_050 Hb_005654_020 Hb_005654_020 Hb_145708_010--Hb_005654_020 Hb_145708_010--Hb_001147_080 Hb_145708_010--Hb_003438_060 Hb_145708_010--Hb_048476_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0406076 0 0.0253789 0.0104494 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis