Hb_001040_110

Information

Type -
Description -
Location Contig1040: 172698-176857
Sequence    

Annotation

kegg
ID rcu:RCOM_0936020
description hypothetical protein
nr
ID XP_012091583.1
description PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21424 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01471: 173024-176676 , PASA_asmbl_01472: 173024-176057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_110 0.0 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
2 Hb_004846_090 0.1264636681 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
3 Hb_011671_390 0.1286367295 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
4 Hb_012505_010 0.13149892 - - mak, putative [Ricinus communis]
5 Hb_000802_100 0.1318269192 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
6 Hb_001300_040 0.1321176741 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
7 Hb_000453_090 0.1361576598 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
8 Hb_000103_010 0.1370618955 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
9 Hb_004375_140 0.1375290148 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
10 Hb_006925_040 0.1376219127 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
11 Hb_002876_120 0.1428119493 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
12 Hb_003077_040 0.1447560849 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
13 Hb_002784_120 0.1448080193 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
14 Hb_002999_050 0.1451253212 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
15 Hb_005496_150 0.145500035 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
16 Hb_001277_070 0.1456213128 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
17 Hb_001235_110 0.1471716356 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_001493_050 0.1473393856 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
19 Hb_000962_040 0.1474450483 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_000735_130 0.1477115619 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001040_110 Hb_001040_110 Hb_004846_090 Hb_004846_090 Hb_001040_110--Hb_004846_090 Hb_011671_390 Hb_011671_390 Hb_001040_110--Hb_011671_390 Hb_012505_010 Hb_012505_010 Hb_001040_110--Hb_012505_010 Hb_000802_100 Hb_000802_100 Hb_001040_110--Hb_000802_100 Hb_001300_040 Hb_001300_040 Hb_001040_110--Hb_001300_040 Hb_000453_090 Hb_000453_090 Hb_001040_110--Hb_000453_090 Hb_004846_090--Hb_000453_090 Hb_004846_090--Hb_011671_390 Hb_004459_040 Hb_004459_040 Hb_004846_090--Hb_004459_040 Hb_001780_040 Hb_001780_040 Hb_004846_090--Hb_001780_040 Hb_000840_180 Hb_000840_180 Hb_004846_090--Hb_000840_180 Hb_028486_030 Hb_028486_030 Hb_004846_090--Hb_028486_030 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_001616_030 Hb_001616_030 Hb_011671_390--Hb_001616_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_001277_070 Hb_001277_070 Hb_012505_010--Hb_001277_070 Hb_004375_140 Hb_004375_140 Hb_012505_010--Hb_004375_140 Hb_129204_030 Hb_129204_030 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_001314_040 Hb_001314_040 Hb_000802_100--Hb_001314_040 Hb_002876_120 Hb_002876_120 Hb_000802_100--Hb_002876_120 Hb_001157_010 Hb_001157_010 Hb_000802_100--Hb_001157_010 Hb_000530_070 Hb_000530_070 Hb_000802_100--Hb_000530_070 Hb_003579_030 Hb_003579_030 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_001300_040--Hb_000453_090 Hb_000510_110 Hb_000510_110 Hb_001300_040--Hb_000510_110 Hb_001300_040--Hb_002999_050 Hb_010672_070 Hb_010672_070 Hb_001300_040--Hb_010672_070 Hb_001300_040--Hb_001780_040 Hb_000029_200 Hb_000029_200 Hb_001300_040--Hb_000029_200 Hb_003683_110 Hb_003683_110 Hb_000453_090--Hb_003683_110 Hb_006925_040 Hb_006925_040 Hb_000453_090--Hb_006925_040 Hb_010672_060 Hb_010672_060 Hb_000453_090--Hb_010672_060 Hb_000453_090--Hb_001780_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.93088 1.36063 16.834 3.95837 6.17901 6.06852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6668 29.9339 21.9011 4.11783 7.48553

CAGE analysis