Hb_001006_310

Information

Type -
Description -
Location Contig1006: 364468-365654
Sequence    

Annotation

kegg
ID tcc:TCM_011176
description hypothetical protein
nr
ID XP_012072401.1
description PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
swissprot
ID Q6NLW5
description Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
trembl
ID A0A067KPR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04839 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00422: 365548-365750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_310 0.0 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
2 Hb_000139_500 0.1580871335 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
3 Hb_008066_060 0.1592634828 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
4 Hb_000723_240 0.1594591632 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_001922_010 0.1635496245 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
6 Hb_003160_050 0.1656508112 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_000347_230 0.1665510583 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
8 Hb_008418_010 0.1672703165 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
9 Hb_001758_120 0.1688308808 - - unnamed protein product [Vitis vinifera]
10 Hb_000116_120 0.169204532 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
11 Hb_000653_010 0.1740689958 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
12 Hb_003768_100 0.1744943763 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
13 Hb_001545_270 0.1752311311 - - laccase, putative [Ricinus communis]
14 Hb_007313_010 0.1766006155 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
15 Hb_006637_040 0.1768245994 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_001963_020 0.1772199361 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_000834_210 0.1784074518 - - unnamed protein product [Vitis vinifera]
18 Hb_000032_560 0.178549024 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
19 Hb_098030_010 0.1793742802 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
20 Hb_000580_070 0.1800788575 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_310 Hb_001006_310 Hb_000139_500 Hb_000139_500 Hb_001006_310--Hb_000139_500 Hb_008066_060 Hb_008066_060 Hb_001006_310--Hb_008066_060 Hb_000723_240 Hb_000723_240 Hb_001006_310--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_001006_310--Hb_001922_010 Hb_003160_050 Hb_003160_050 Hb_001006_310--Hb_003160_050 Hb_000347_230 Hb_000347_230 Hb_001006_310--Hb_000347_230 Hb_000318_060 Hb_000318_060 Hb_000139_500--Hb_000318_060 Hb_000393_030 Hb_000393_030 Hb_000139_500--Hb_000393_030 Hb_003913_060 Hb_003913_060 Hb_000139_500--Hb_003913_060 Hb_000139_500--Hb_003160_050 Hb_003398_090 Hb_003398_090 Hb_000139_500--Hb_003398_090 Hb_000139_500--Hb_008066_060 Hb_000653_010 Hb_000653_010 Hb_008066_060--Hb_000653_010 Hb_008066_060--Hb_000723_240 Hb_000836_480 Hb_000836_480 Hb_008066_060--Hb_000836_480 Hb_001545_270 Hb_001545_270 Hb_008066_060--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_008066_060--Hb_008418_010 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_000723_240--Hb_008418_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_001922_010--Hb_001545_270 Hb_001922_010--Hb_008418_010 Hb_032631_080 Hb_032631_080 Hb_001922_010--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_001922_010--Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001922_010--Hb_011145_020 Hb_003160_050--Hb_000834_210 Hb_003160_050--Hb_007313_010 Hb_003768_100 Hb_003768_100 Hb_003160_050--Hb_003768_100 Hb_002003_010 Hb_002003_010 Hb_003160_050--Hb_002003_010 Hb_018133_110 Hb_018133_110 Hb_000347_230--Hb_018133_110 Hb_006618_080 Hb_006618_080 Hb_000347_230--Hb_006618_080 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000032_560 Hb_000032_560 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_003734_120 Hb_003734_120 Hb_000347_230--Hb_003734_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19813 1.21111 3.3623 6.26286 0.147922 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120753 0 0 16.5393 2.20962

CAGE analysis