Hb_001006_230

Information

Type -
Description -
Location Contig1006: 282736-283779
Sequence    

Annotation

kegg
ID rcu:RCOM_0775930
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002521887.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9M1K9
description Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis thaliana GN=TA1 PE=2 SV=1
trembl
ID B9S7B8
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0775930 PE=3 SV=1
Gene Ontology
ID GO:0004316
description short-chain dehydrogenase reductase 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 043_P14r.ab1: 276494-282211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_230 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_001828_140 0.1449028395 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
3 Hb_001959_080 0.1790443256 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001488_330 0.1855976794 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
5 Hb_002609_220 0.1967512299 - - Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
6 Hb_006788_160 0.1984261381 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
7 Hb_007547_010 0.1987008965 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
8 Hb_164804_010 0.1993072567 - - JHL23J11.8 [Jatropha curcas]
9 Hb_002527_030 0.2013361415 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
10 Hb_003786_020 0.2040357945 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
11 Hb_000483_350 0.204374893 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
12 Hb_002904_030 0.2046528129 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
13 Hb_000625_020 0.2048311285 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000188_100 0.2055231257 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
15 Hb_007672_050 0.2062656586 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_005054_180 0.2072007733 - - coronatine-insensitive 1 [Hevea brasiliensis]
17 Hb_002686_290 0.2074415557 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
18 Hb_002025_200 0.2086072962 - - -
19 Hb_000977_070 0.2088643613 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
20 Hb_000009_550 0.2088645621 - - hypothetical protein RCOM_0603640 [Ricinus communis]

Gene co-expression network

sample Hb_001006_230 Hb_001006_230 Hb_001828_140 Hb_001828_140 Hb_001006_230--Hb_001828_140 Hb_001959_080 Hb_001959_080 Hb_001006_230--Hb_001959_080 Hb_001488_330 Hb_001488_330 Hb_001006_230--Hb_001488_330 Hb_002609_220 Hb_002609_220 Hb_001006_230--Hb_002609_220 Hb_006788_160 Hb_006788_160 Hb_001006_230--Hb_006788_160 Hb_007547_010 Hb_007547_010 Hb_001006_230--Hb_007547_010 Hb_171900_080 Hb_171900_080 Hb_001828_140--Hb_171900_080 Hb_007672_050 Hb_007672_050 Hb_001828_140--Hb_007672_050 Hb_001828_140--Hb_001959_080 Hb_003376_040 Hb_003376_040 Hb_001828_140--Hb_003376_040 Hb_001828_140--Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_001828_140--Hb_003609_040 Hb_001959_080--Hb_001488_330 Hb_001862_190 Hb_001862_190 Hb_001959_080--Hb_001862_190 Hb_003001_120 Hb_003001_120 Hb_001959_080--Hb_003001_120 Hb_000089_220 Hb_000089_220 Hb_001959_080--Hb_000089_220 Hb_002968_060 Hb_002968_060 Hb_001959_080--Hb_002968_060 Hb_006332_020 Hb_006332_020 Hb_001959_080--Hb_006332_020 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_000022_250 Hb_000022_250 Hb_001488_330--Hb_000022_250 Hb_000554_020 Hb_000554_020 Hb_001488_330--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040 Hb_005532_060 Hb_005532_060 Hb_002609_220--Hb_005532_060 Hb_004324_370 Hb_004324_370 Hb_002609_220--Hb_004324_370 Hb_000223_150 Hb_000223_150 Hb_002609_220--Hb_000223_150 Hb_006501_040 Hb_006501_040 Hb_002609_220--Hb_006501_040 Hb_001009_310 Hb_001009_310 Hb_002609_220--Hb_001009_310 Hb_178968_110 Hb_178968_110 Hb_002609_220--Hb_178968_110 Hb_000345_170 Hb_000345_170 Hb_006788_160--Hb_000345_170 Hb_154745_010 Hb_154745_010 Hb_006788_160--Hb_154745_010 Hb_000977_210 Hb_000977_210 Hb_006788_160--Hb_000977_210 Hb_002527_030 Hb_002527_030 Hb_006788_160--Hb_002527_030 Hb_010642_030 Hb_010642_030 Hb_006788_160--Hb_010642_030 Hb_000367_130 Hb_000367_130 Hb_006788_160--Hb_000367_130 Hb_007547_010--Hb_003609_040 Hb_000030_010 Hb_000030_010 Hb_007547_010--Hb_000030_010 Hb_002182_040 Hb_002182_040 Hb_007547_010--Hb_002182_040 Hb_014720_160 Hb_014720_160 Hb_007547_010--Hb_014720_160 Hb_000001_020 Hb_000001_020 Hb_007547_010--Hb_000001_020 Hb_003297_030 Hb_003297_030 Hb_007547_010--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.576932 0.300635 0.0242145 0.113727 0.438675 0.421433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.349009 0.493948 0.297127 0 0.329661

CAGE analysis