Hb_001828_140

Information

Type -
Description -
Location Contig1828: 158093-171367
Sequence    

Annotation

kegg
ID rcu:RCOM_1679020
description hypothetical protein
nr
ID XP_012070985.1
description PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10167 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17823: 147927-158297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_140 0.0 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
2 Hb_171900_080 0.1006977855 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_007672_050 0.1038833159 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_001959_080 0.1065904636 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003376_040 0.1092467941 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
6 Hb_007547_010 0.1101631904 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
7 Hb_003609_040 0.1110075039 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
8 Hb_002686_290 0.1131117421 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
9 Hb_000188_100 0.117824938 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
10 Hb_002182_040 0.1180751815 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_002477_160 0.1221961633 - - hypothetical protein L484_013453 [Morus notabilis]
12 Hb_000943_070 0.1233285526 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
13 Hb_000030_010 0.1248405171 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_007908_020 0.1254794262 - - zinc finger family protein [Populus trichocarpa]
15 Hb_004812_010 0.1256579163 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
16 Hb_001488_330 0.1258239915 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
17 Hb_002553_020 0.1265854103 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010795_010 0.1277355487 - - protein with unknown function [Ricinus communis]
19 Hb_000614_230 0.1310902151 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
20 Hb_010710_110 0.1313861172 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001828_140 Hb_001828_140 Hb_171900_080 Hb_171900_080 Hb_001828_140--Hb_171900_080 Hb_007672_050 Hb_007672_050 Hb_001828_140--Hb_007672_050 Hb_001959_080 Hb_001959_080 Hb_001828_140--Hb_001959_080 Hb_003376_040 Hb_003376_040 Hb_001828_140--Hb_003376_040 Hb_007547_010 Hb_007547_010 Hb_001828_140--Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_001828_140--Hb_003609_040 Hb_010795_010 Hb_010795_010 Hb_171900_080--Hb_010795_010 Hb_002518_140 Hb_002518_140 Hb_171900_080--Hb_002518_140 Hb_001277_330 Hb_001277_330 Hb_171900_080--Hb_001277_330 Hb_003266_130 Hb_003266_130 Hb_171900_080--Hb_003266_130 Hb_000123_120 Hb_000123_120 Hb_171900_080--Hb_000123_120 Hb_178968_110 Hb_178968_110 Hb_171900_080--Hb_178968_110 Hb_002496_050 Hb_002496_050 Hb_007672_050--Hb_002496_050 Hb_164926_030 Hb_164926_030 Hb_007672_050--Hb_164926_030 Hb_007672_050--Hb_001277_330 Hb_002686_290 Hb_002686_290 Hb_007672_050--Hb_002686_290 Hb_007672_050--Hb_003376_040 Hb_001488_330 Hb_001488_330 Hb_001959_080--Hb_001488_330 Hb_001862_190 Hb_001862_190 Hb_001959_080--Hb_001862_190 Hb_003001_120 Hb_003001_120 Hb_001959_080--Hb_003001_120 Hb_000089_220 Hb_000089_220 Hb_001959_080--Hb_000089_220 Hb_002968_060 Hb_002968_060 Hb_001959_080--Hb_002968_060 Hb_006332_020 Hb_006332_020 Hb_001959_080--Hb_006332_020 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_003376_040--Hb_001862_190 Hb_001396_180 Hb_001396_180 Hb_003376_040--Hb_001396_180 Hb_000096_090 Hb_000096_090 Hb_003376_040--Hb_000096_090 Hb_007547_010--Hb_003609_040 Hb_000030_010 Hb_000030_010 Hb_007547_010--Hb_000030_010 Hb_002182_040 Hb_002182_040 Hb_007547_010--Hb_002182_040 Hb_014720_160 Hb_014720_160 Hb_007547_010--Hb_014720_160 Hb_000001_020 Hb_000001_020 Hb_007547_010--Hb_000001_020 Hb_003297_030 Hb_003297_030 Hb_007547_010--Hb_003297_030 Hb_003609_040--Hb_000001_020 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003609_040--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9395 10.5355 3.36728 9.29797 23.3666 20.8003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6615 22.0343 23.1842 1.8438 10.3212

CAGE analysis