Hb_000556_140

Information

Type transcription factor
Description TF Family: GRF
Location Contig556: 145037-148148
Sequence    

Annotation

kegg
ID rcu:RCOM_1612510
description hypothetical protein
nr
ID XP_012083546.1
description PREDICTED: growth-regulating factor 9 [Jatropha curcas]
swissprot
ID Q8S9M3
description Growth-regulating factor 9 OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=1
trembl
ID A0A067K148
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14504 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48518: 147236-147930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_140 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
2 Hb_003205_030 0.1021791184 - - Pectinesterase inhibitor, putative [Ricinus communis]
3 Hb_000441_170 0.1077255159 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
4 Hb_002232_400 0.1131518529 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
5 Hb_006006_070 0.1248748373 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000288_140 0.1249018056 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
7 Hb_032050_050 0.1260656106 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_131864_020 0.1285630598 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
9 Hb_002900_070 0.129225902 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002749_070 0.13781394 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
11 Hb_002272_160 0.1380659847 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_001473_100 0.138234057 - - chalcone synthase 1 [Jatropha curcas]
13 Hb_000175_480 0.1385220154 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
14 Hb_058526_010 0.1401860886 - - -
15 Hb_004445_090 0.1408769251 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002110_270 0.1418887725 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_127743_030 0.1436778766 - - amino acid transporter, putative [Ricinus communis]
18 Hb_001959_030 0.1445249689 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003786_060 0.1474260557 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
20 Hb_000025_740 0.1486217988 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_140 Hb_000556_140 Hb_003205_030 Hb_003205_030 Hb_000556_140--Hb_003205_030 Hb_000441_170 Hb_000441_170 Hb_000556_140--Hb_000441_170 Hb_002232_400 Hb_002232_400 Hb_000556_140--Hb_002232_400 Hb_006006_070 Hb_006006_070 Hb_000556_140--Hb_006006_070 Hb_000288_140 Hb_000288_140 Hb_000556_140--Hb_000288_140 Hb_032050_050 Hb_032050_050 Hb_000556_140--Hb_032050_050 Hb_004544_070 Hb_004544_070 Hb_003205_030--Hb_004544_070 Hb_003205_030--Hb_002232_400 Hb_002749_070 Hb_002749_070 Hb_003205_030--Hb_002749_070 Hb_003205_030--Hb_006006_070 Hb_000438_190 Hb_000438_190 Hb_003205_030--Hb_000438_190 Hb_002900_070 Hb_002900_070 Hb_000441_170--Hb_002900_070 Hb_000441_170--Hb_002232_400 Hb_000441_170--Hb_006006_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_098795_010 Hb_098795_010 Hb_000441_170--Hb_098795_010 Hb_076895_020 Hb_076895_020 Hb_000441_170--Hb_076895_020 Hb_002232_400--Hb_006006_070 Hb_002232_400--Hb_076895_020 Hb_002232_370 Hb_002232_370 Hb_002232_400--Hb_002232_370 Hb_002232_400--Hb_002900_070 Hb_002232_400--Hb_000438_190 Hb_002110_270 Hb_002110_270 Hb_006006_070--Hb_002110_270 Hb_006006_070--Hb_076895_020 Hb_000758_030 Hb_000758_030 Hb_006006_070--Hb_000758_030 Hb_000539_080 Hb_000539_080 Hb_006006_070--Hb_000539_080 Hb_001660_040 Hb_001660_040 Hb_000288_140--Hb_001660_040 Hb_001609_080 Hb_001609_080 Hb_000288_140--Hb_001609_080 Hb_058526_010 Hb_058526_010 Hb_000288_140--Hb_058526_010 Hb_000005_350 Hb_000005_350 Hb_000288_140--Hb_000005_350 Hb_003166_040 Hb_003166_040 Hb_000288_140--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_000288_140--Hb_127743_030 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_032050_050--Hb_002110_270 Hb_002150_010 Hb_002150_010 Hb_032050_050--Hb_002150_010 Hb_032050_050--Hb_002900_070 Hb_032050_050--Hb_006006_070 Hb_032050_050--Hb_076895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0543379 0.651122 0.53634 0.571179 0.0273015 0.0423468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.80978 0.0718747

CAGE analysis