Hb_000517_040

Information

Type -
Description -
Location Contig517: 82617-88484
Sequence    

Annotation

kegg
ID vvi:100243183
description protein argonaute 16
nr
ID XP_012080654.1
description PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
swissprot
ID Q6YSJ5
description Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2
trembl
ID A0A067K3M5
description Protein argonaute OS=Jatropha curcas GN=JCGZ_13759 PE=3 SV=1
Gene Ontology
ID GO:0003723
description protein argonaute 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46540: 84829-85059 , PASA_asmbl_46541: 86251-87418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000517_040 0.0 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
2 Hb_000451_070 0.1690340915 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_006788_140 0.1716456806 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
4 Hb_189208_020 0.1784290466 - - LRX2, putative [Ricinus communis]
5 Hb_000649_240 0.1805473381 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
6 Hb_000270_440 0.1811352987 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
7 Hb_088753_010 0.1827276926 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
8 Hb_003175_030 0.1829842787 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
9 Hb_011173_040 0.1843466458 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]
10 Hb_000218_030 0.1855770882 - - -
11 Hb_002007_150 0.1875716888 - - -
12 Hb_001396_200 0.1875886578 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
13 Hb_001564_080 0.1880459855 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
14 Hb_000402_210 0.1882813511 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
15 Hb_007382_120 0.1896278626 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
16 Hb_008959_020 0.1896511747 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
17 Hb_010381_030 0.1905142017 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
18 Hb_001153_180 0.1923820085 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
19 Hb_109484_010 0.1928055869 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_003203_020 0.1930635737 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_000517_040 Hb_000517_040 Hb_000451_070 Hb_000451_070 Hb_000517_040--Hb_000451_070 Hb_006788_140 Hb_006788_140 Hb_000517_040--Hb_006788_140 Hb_189208_020 Hb_189208_020 Hb_000517_040--Hb_189208_020 Hb_000649_240 Hb_000649_240 Hb_000517_040--Hb_000649_240 Hb_000270_440 Hb_000270_440 Hb_000517_040--Hb_000270_440 Hb_088753_010 Hb_088753_010 Hb_000517_040--Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_000987_060 Hb_000987_060 Hb_006788_140--Hb_000987_060 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_002097_200 Hb_002097_200 Hb_006788_140--Hb_002097_200 Hb_189208_020--Hb_002097_200 Hb_189208_020--Hb_001894_050 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_021888_050 Hb_021888_050 Hb_000649_240--Hb_021888_050 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000649_240--Hb_028487_020 Hb_000649_240--Hb_002097_200 Hb_000649_240--Hb_006788_140 Hb_000649_240--Hb_000451_070 Hb_005653_060 Hb_005653_060 Hb_000270_440--Hb_005653_060 Hb_001021_130 Hb_001021_130 Hb_000270_440--Hb_001021_130 Hb_009510_040 Hb_009510_040 Hb_000270_440--Hb_009510_040 Hb_006018_040 Hb_006018_040 Hb_000270_440--Hb_006018_040 Hb_000270_440--Hb_002042_130 Hb_003647_060 Hb_003647_060 Hb_000270_440--Hb_003647_060 Hb_088753_010--Hb_000402_210 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_189208_020 Hb_088753_010--Hb_006788_140 Hb_000302_260 Hb_000302_260 Hb_088753_010--Hb_000302_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8296 4.44341 0.431221 1.82388 0.754993 0.777746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14159 2.34868 0.632963 1.6804 1.27046

CAGE analysis