Hb_000479_320

Information

Type -
Description -
Location Contig479: 219684-227966
Sequence    

Annotation

kegg
ID tcc:TCM_018679
description Pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084768.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9STE1
description Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
trembl
ID A0A067JTA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44661: 228515-234300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_320 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like [Jatropha curcas]
2 Hb_001104_170 0.1112091311 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
3 Hb_002263_040 0.1153487302 - - carbon catabolite repressor protein, putative [Ricinus communis]
4 Hb_002636_100 0.1196717678 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
5 Hb_005018_020 0.1240680714 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
6 Hb_000442_010 0.1245988848 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
7 Hb_011512_120 0.1270990376 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
8 Hb_145022_010 0.1289873972 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
9 Hb_008775_040 0.1290862686 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
10 Hb_001828_130 0.1295632398 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_003055_140 0.1314814995 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
12 Hb_010417_070 0.1316448302 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
13 Hb_000012_260 0.1319738141 - - Far upstream element-binding 2 [Gossypium arboreum]
14 Hb_000175_220 0.1329690155 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
15 Hb_002798_070 0.1331649236 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
16 Hb_000291_010 0.1343537327 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_003728_040 0.1355089542 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
18 Hb_004228_020 0.1358429545 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
19 Hb_004371_010 0.1361944778 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
20 Hb_000347_120 0.1368450712 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_320 Hb_000479_320 Hb_001104_170 Hb_001104_170 Hb_000479_320--Hb_001104_170 Hb_002263_040 Hb_002263_040 Hb_000479_320--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_000479_320--Hb_002636_100 Hb_005018_020 Hb_005018_020 Hb_000479_320--Hb_005018_020 Hb_000442_010 Hb_000442_010 Hb_000479_320--Hb_000442_010 Hb_011512_120 Hb_011512_120 Hb_000479_320--Hb_011512_120 Hb_001104_170--Hb_000442_010 Hb_005389_160 Hb_005389_160 Hb_001104_170--Hb_005389_160 Hb_001766_020 Hb_001766_020 Hb_001104_170--Hb_001766_020 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002263_040--Hb_002636_100 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_005018_020--Hb_000291_010 Hb_060094_020 Hb_060094_020 Hb_005018_020--Hb_060094_020 Hb_005018_020--Hb_000061_030 Hb_005018_020--Hb_001104_170 Hb_005018_020--Hb_002263_040 Hb_002329_020 Hb_002329_020 Hb_005018_020--Hb_002329_020 Hb_000442_010--Hb_002798_070 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_001828_130 Hb_001828_130 Hb_011512_120--Hb_001828_130 Hb_000175_220 Hb_000175_220 Hb_011512_120--Hb_000175_220 Hb_011512_120--Hb_000322_150 Hb_011512_120--Hb_002636_100 Hb_005675_040 Hb_005675_040 Hb_011512_120--Hb_005675_040 Hb_000256_140 Hb_000256_140 Hb_011512_120--Hb_000256_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.853856 3.24877 1.51323 0.525169 0.931371 1.84692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.665627 1.24118 1.69909 1.48135 0.874663

CAGE analysis