Hb_000196_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig196: 121187-128674
Sequence    

Annotation

kegg
ID rcu:RCOM_1334000
description DNA binding protein, putative
nr
ID XP_012075470.1
description PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
swissprot
ID Q9C8P8
description Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=2 SV=1
trembl
ID A0A067KTD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10941 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19658: 121050-121303 , PASA_asmbl_19659: 121621-122040 , PASA_asmbl_19660: 122177-128598 , PASA_asmbl_19661: 122304-122497 , PASA_asmbl_19662: 126382-126736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000196_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH80-like [Jatropha curcas]
2 Hb_011316_050 0.090368332 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
3 Hb_000768_040 0.0909584197 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
4 Hb_002603_120 0.0921618577 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
5 Hb_001258_090 0.104978214 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_045793_010 0.1065948654 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
7 Hb_001511_020 0.1074113937 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
8 Hb_023827_040 0.1094542999 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
9 Hb_003464_050 0.1095251285 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
10 Hb_001595_030 0.1112845101 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_001019_230 0.1119028635 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
12 Hb_004096_030 0.1121617537 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
13 Hb_005694_110 0.1133044975 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
14 Hb_004684_010 0.1133233244 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
15 Hb_000788_100 0.1137016444 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
16 Hb_003001_140 0.1139466694 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
17 Hb_036790_100 0.1143024981 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
18 Hb_001610_110 0.1154419559 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_054865_090 0.115544682 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
20 Hb_003464_060 0.1155920403 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]

Gene co-expression network

sample Hb_000196_070 Hb_000196_070 Hb_011316_050 Hb_011316_050 Hb_000196_070--Hb_011316_050 Hb_000768_040 Hb_000768_040 Hb_000196_070--Hb_000768_040 Hb_002603_120 Hb_002603_120 Hb_000196_070--Hb_002603_120 Hb_001258_090 Hb_001258_090 Hb_000196_070--Hb_001258_090 Hb_045793_010 Hb_045793_010 Hb_000196_070--Hb_045793_010 Hb_001511_020 Hb_001511_020 Hb_000196_070--Hb_001511_020 Hb_000453_170 Hb_000453_170 Hb_011316_050--Hb_000453_170 Hb_006316_040 Hb_006316_040 Hb_011316_050--Hb_006316_040 Hb_002496_030 Hb_002496_030 Hb_011316_050--Hb_002496_030 Hb_000827_070 Hb_000827_070 Hb_011316_050--Hb_000827_070 Hb_001242_060 Hb_001242_060 Hb_011316_050--Hb_001242_060 Hb_004684_010 Hb_004684_010 Hb_011316_050--Hb_004684_010 Hb_003464_060 Hb_003464_060 Hb_000768_040--Hb_003464_060 Hb_000768_040--Hb_002603_120 Hb_001021_170 Hb_001021_170 Hb_000768_040--Hb_001021_170 Hb_001226_030 Hb_001226_030 Hb_000768_040--Hb_001226_030 Hb_000768_040--Hb_004684_010 Hb_004355_020 Hb_004355_020 Hb_000768_040--Hb_004355_020 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_003010_030 Hb_003010_030 Hb_001258_090--Hb_003010_030 Hb_001258_090--Hb_001595_030 Hb_000093_160 Hb_000093_160 Hb_001258_090--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060 Hb_000025_360 Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_045793_010--Hb_000827_070 Hb_076693_020 Hb_076693_020 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_001439_150 Hb_001439_150 Hb_001511_020--Hb_001439_150 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_002685_140 Hb_002685_140 Hb_001511_020--Hb_002685_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.737 12.786 7.793 2.89102 9.01001 16.565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3425 12.5039 11.136 3.79704 5.31871

CAGE analysis