Hb_000125_040

Information

Type -
Description -
Location Contig125: 55922-57921
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07594: 37220-57500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000125_040 0.0 - - -
2 Hb_150204_010 0.1292803938 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_015026_060 0.149469324 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
4 Hb_000613_100 0.1516604546 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
5 Hb_183980_010 0.1525784437 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
6 Hb_175612_010 0.1531315036 transcription factor TF Family: MBF1 orf [Ricinus communis]
7 Hb_002774_070 0.1532047713 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
8 Hb_012193_010 0.1534995603 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_011612_010 0.1547380304 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_002508_010 0.155968015 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
11 Hb_008643_060 0.1560672196 - - unnamed protein product [Coffea canephora]
12 Hb_173178_020 0.1577674443 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
13 Hb_000352_090 0.1602148307 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
14 Hb_005735_030 0.1620950901 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002701_080 0.1625776654 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
16 Hb_165350_010 0.1638944223 - - unnamed protein product [Triticum aestivum]
17 Hb_003716_020 0.166434491 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
18 Hb_000230_330 0.1672266364 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
19 Hb_083043_010 0.1672317611 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
20 Hb_023001_050 0.1676605362 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]

Gene co-expression network

sample Hb_000125_040 Hb_000125_040 Hb_150204_010 Hb_150204_010 Hb_000125_040--Hb_150204_010 Hb_015026_060 Hb_015026_060 Hb_000125_040--Hb_015026_060 Hb_000613_100 Hb_000613_100 Hb_000125_040--Hb_000613_100 Hb_183980_010 Hb_183980_010 Hb_000125_040--Hb_183980_010 Hb_175612_010 Hb_175612_010 Hb_000125_040--Hb_175612_010 Hb_002774_070 Hb_002774_070 Hb_000125_040--Hb_002774_070 Hb_033312_140 Hb_033312_140 Hb_150204_010--Hb_033312_140 Hb_041392_010 Hb_041392_010 Hb_150204_010--Hb_041392_010 Hb_004198_010 Hb_004198_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_003434_060 Hb_003434_060 Hb_150204_010--Hb_003434_060 Hb_015026_060--Hb_083043_010 Hb_000424_230 Hb_000424_230 Hb_015026_060--Hb_000424_230 Hb_001279_330 Hb_001279_330 Hb_015026_060--Hb_001279_330 Hb_015026_060--Hb_000613_100 Hb_005368_010 Hb_005368_010 Hb_015026_060--Hb_005368_010 Hb_001040_120 Hb_001040_120 Hb_015026_060--Hb_001040_120 Hb_000849_100 Hb_000849_100 Hb_000613_100--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_000613_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000613_100--Hb_003716_020 Hb_001582_030 Hb_001582_030 Hb_000613_100--Hb_001582_030 Hb_002235_320 Hb_002235_320 Hb_000613_100--Hb_002235_320 Hb_000261_520 Hb_000261_520 Hb_000613_100--Hb_000261_520 Hb_176117_010 Hb_176117_010 Hb_183980_010--Hb_176117_010 Hb_000200_040 Hb_000200_040 Hb_183980_010--Hb_000200_040 Hb_023327_030 Hb_023327_030 Hb_183980_010--Hb_023327_030 Hb_183980_010--Hb_001582_030 Hb_077211_010 Hb_077211_010 Hb_183980_010--Hb_077211_010 Hb_007534_040 Hb_007534_040 Hb_175612_010--Hb_007534_040 Hb_000617_220 Hb_000617_220 Hb_175612_010--Hb_000617_220 Hb_000175_390 Hb_000175_390 Hb_175612_010--Hb_000175_390 Hb_000236_300 Hb_000236_300 Hb_175612_010--Hb_000236_300 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_009411_020 Hb_009411_020 Hb_002774_070--Hb_009411_020 Hb_002774_070--Hb_000156_140 Hb_005432_010 Hb_005432_010 Hb_002774_070--Hb_005432_010 Hb_002774_070--Hb_033312_140 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19791 1.16284 0.705739 1.92097 4.19116 4.92204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.951931 1.62008 1.6518 0.785478 0

CAGE analysis