Hb_000012_430

Information

Type -
Description -
Location Contig12: 628567-633622
Sequence    

Annotation

kegg
ID rcu:RCOM_0797610
description calcineurin B, putative
nr
ID XP_002516451.1
description calcineurin B, putative [Ricinus communis]
swissprot
ID Q7FRS8
description Calcineurin B-like protein 10 OS=Arabidopsis thaliana GN=CBL10 PE=1 SV=1
trembl
ID B9RRT2
description Calcineurin B, putative OS=Ricinus communis GN=RCOM_0797610 PE=4 SV=1
Gene Ontology
ID GO:0009705
description calcineurin b-like protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06039: 628792-629024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_430 0.0 - - calcineurin B, putative [Ricinus communis]
2 Hb_000230_200 0.1059478219 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
3 Hb_002681_050 0.1073207959 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
4 Hb_000768_170 0.1139504679 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
5 Hb_002529_060 0.1157543736 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
6 Hb_007904_200 0.1159720146 - - protein binding protein, putative [Ricinus communis]
7 Hb_000085_180 0.1167206343 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
8 Hb_003683_050 0.1171756731 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
9 Hb_000125_130 0.1181122007 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
10 Hb_000316_130 0.1183104593 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
11 Hb_002046_190 0.1192752816 - - calcium-binding family protein [Populus trichocarpa]
12 Hb_001269_680 0.1192891457 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
13 Hb_000009_080 0.1204386386 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
14 Hb_000416_040 0.1209435131 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
15 Hb_001481_170 0.1214937844 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003001_120 0.1233265956 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_000307_140 0.1240438462 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
18 Hb_002671_140 0.1252607817 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_001699_040 0.1263740658 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
20 Hb_002762_120 0.1267195841 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_430 Hb_000012_430 Hb_000230_200 Hb_000230_200 Hb_000012_430--Hb_000230_200 Hb_002681_050 Hb_002681_050 Hb_000012_430--Hb_002681_050 Hb_000768_170 Hb_000768_170 Hb_000012_430--Hb_000768_170 Hb_002529_060 Hb_002529_060 Hb_000012_430--Hb_002529_060 Hb_007904_200 Hb_007904_200 Hb_000012_430--Hb_007904_200 Hb_000085_180 Hb_000085_180 Hb_000012_430--Hb_000085_180 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_000606_090 Hb_000606_090 Hb_002681_050--Hb_000606_090 Hb_007477_080 Hb_007477_080 Hb_002681_050--Hb_007477_080 Hb_001377_320 Hb_001377_320 Hb_002681_050--Hb_001377_320 Hb_073171_040 Hb_073171_040 Hb_002681_050--Hb_073171_040 Hb_008511_130 Hb_008511_130 Hb_002681_050--Hb_008511_130 Hb_002681_050--Hb_002529_060 Hb_003020_020 Hb_003020_020 Hb_000768_170--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_000768_170--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_000768_170--Hb_005054_060 Hb_000347_540 Hb_000347_540 Hb_000768_170--Hb_000347_540 Hb_001481_170 Hb_001481_170 Hb_000768_170--Hb_001481_170 Hb_000690_160 Hb_000690_160 Hb_000768_170--Hb_000690_160 Hb_006816_390 Hb_006816_390 Hb_002529_060--Hb_006816_390 Hb_000645_050 Hb_000645_050 Hb_002529_060--Hb_000645_050 Hb_000465_430 Hb_000465_430 Hb_002529_060--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_002529_060--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_002529_060--Hb_003502_080 Hb_000322_100 Hb_000322_100 Hb_002529_060--Hb_000322_100 Hb_000010_330 Hb_000010_330 Hb_007904_200--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_007904_200--Hb_010457_030 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_001454_400 Hb_001454_400 Hb_000085_180--Hb_001454_400 Hb_003683_050 Hb_003683_050 Hb_000085_180--Hb_003683_050 Hb_000618_040 Hb_000618_040 Hb_000085_180--Hb_000618_040 Hb_033843_010 Hb_033843_010 Hb_000085_180--Hb_033843_010 Hb_004310_020 Hb_004310_020 Hb_000085_180--Hb_004310_020 Hb_000092_100 Hb_000092_100 Hb_000085_180--Hb_000092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3819 9.77121 12.6962 17.8954 13.2219 23.4909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9845 19.1053 15.4336 2.06127 7.47581

CAGE analysis