Gene annotation
Transcriptome id Sobic.004G044100.1,Sobic.004G044100.2
Synonym Sb04g003780
Functional annotation expressed protein
UniProt A0A1Z5RLD1 , A0A1Z5RKY1
Pfam PF14389 PF04784
Panther DB PTHR23054 PTHR23054:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13000 : Protein of unknown function, DUF547
RAP-DB (Rice) LOC_Os06g47770.1,LOC_Os02g05900.1 : expressed protein,ternary complex factor MIP1, putative, expressed
MaizeGDB (Corn) Zm00025a019013
Brachypodium KQK17285 , KQK17284 , PNT65906 , PNT65907 , PNT65905 , PNT75491 , PNT75490 , PNT75492 , PNT65908
Barley HORVU6Hr1G023040.22 , HORVU6Hr1G023040.23 , HORVU6Hr1G023040.20 , HORVU6Hr1G023040.2 , HORVU6Hr1G023040.27 , HORVU6Hr1G023040.24 , HORVU6Hr1G023040.25 , HORVU6Hr1G023040.4 , HORVU6Hr1G023040.9 , HORVU6Hr1G023040.3 , HORVU6Hr1G023040.1 , HORVU6Hr1G023040.7 , HORVU6Hr1G023040.6 , HORVU6Hr1G023040.5 , HORVU6Hr1G023040.21 , HORVU6Hr1G023040.26 , HORVU6Hr1G023040.28 , HORVU6Hr1G023040.29 , HORVU6Hr1G023040.19 , HORVU6Hr1G023040.18 , HORVU6Hr1G023040.13 , HORVU6Hr1G023040.12 , HORVU6Hr1G023040.11 , HORVU6Hr1G023040.10 , HORVU6Hr1G023040.17 , HORVU6Hr1G023040.15 , HORVU6Hr1G023040.14
Wheat TraesCS6A02G124100 , TraesCS6D02G114400 , TraesCS6B02G152100 , TraesCS6B02G152100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
2 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -
3 Sobic.006G178800 DUF630/DUF632 domains containing protein, putative, expressed -
4 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.007G123200 heavy metal-associated domain containing protein, expressed -
6 Sobic.004G243400 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
7 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
8 Sobic.008G143600 expressed protein -
9 Sobic.007G090415 - -
10 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
11 Sobic.006G060700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@basic proline-rich protein, putative, expressed -
12 Sobic.008G190500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
13 Sobic.002G179700 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.006G060500 expressed protein -
15 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
16 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
17 Sobic.008G107100 cytochrome P450, putative, expressed -
18 Sobic.004G300800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
19 Sobic.009G102800 MRH1, putative, expressed -
20 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic004G044100 Sobic004G044100 Sobic008G008500 Sobic008G008500 Sobic004G044100--Sobic008G008500 Sobic003G042100 Sobic003G042100 Sobic004G044100--Sobic003G042100 Sobic006G178800 Sobic006G178800 Sobic004G044100--Sobic006G178800 Sobic003G333000 Sobic003G333000 Sobic004G044100--Sobic003G333000 Sobic007G123200 Sobic007G123200 Sobic004G044100--Sobic007G123200 Sobic004G243400 Sobic004G243400 Sobic004G044100--Sobic004G243400 Sobic003G029300 Sobic003G029300 Sobic004G044100--Sobic003G029300 Sobic008G143600 Sobic008G143600 Sobic004G044100--Sobic008G143600 Sobic007G090415 Sobic007G090415 Sobic004G044100--Sobic007G090415 Sobic002G064400 Sobic002G064400 Sobic008G008500--Sobic002G064400 Sobic009G083300 Sobic009G083300 Sobic008G008500--Sobic009G083300 Sobic008G008500--Sobic007G123200 Sobic008G130700 Sobic008G130700 Sobic008G008500--Sobic008G130700 Sobic002G190100 Sobic002G190100 Sobic008G008500--Sobic002G190100 Sobic008G008500--Sobic007G090415 Sobic001G142400 Sobic001G142400 Sobic008G008500--Sobic001G142400 Sobic003G071600 Sobic003G071600 Sobic008G008500--Sobic003G071600 Sobic006G060500 Sobic006G060500 Sobic008G008500--Sobic006G060500 Sobic001G061600 Sobic001G061600 Sobic003G042100--Sobic001G061600 Sobic008G021700 Sobic008G021700 Sobic003G042100--Sobic008G021700 Sobic001G215300 Sobic001G215300 Sobic003G042100--Sobic001G215300 Sobic001G236800 Sobic001G236800 Sobic003G042100--Sobic001G236800 Sobic004G193800 Sobic004G193800 Sobic003G042100--Sobic004G193800 Sobic003G042100--Sobic008G008500 Sobic003G042100--Sobic003G029300 Sobic009G251300 Sobic009G251300 Sobic003G042100--Sobic009G251300 Sobic007G154800 Sobic007G154800 Sobic003G042100--Sobic007G154800 Sobic009G134000 Sobic009G134000 Sobic006G178800--Sobic009G134000 Sobic010G143300 Sobic010G143300 Sobic006G178800--Sobic010G143300 Sobic006G178800--Sobic003G333000 Sobic007G113900 Sobic007G113900 Sobic006G178800--Sobic007G113900 Sobic002G396200 Sobic002G396200 Sobic006G178800--Sobic002G396200 Sobic002G142500 Sobic002G142500 Sobic006G178800--Sobic002G142500 Sobic010G207700 Sobic010G207700 Sobic006G178800--Sobic010G207700 Sobic006G178800--Sobic004G044100 Sobic005G227050 Sobic005G227050 Sobic006G178800--Sobic005G227050 Sobic010G107200 Sobic010G107200 Sobic003G333000--Sobic010G107200 Sobic005G196500 Sobic005G196500 Sobic003G333000--Sobic005G196500 Sobic009G154100 Sobic009G154100 Sobic003G333000--Sobic009G154100 Sobic002G315000 Sobic002G315000 Sobic003G333000--Sobic002G315000 Sobic005G209900 Sobic005G209900 Sobic003G333000--Sobic005G209900 Sobic002G201100 Sobic002G201100 Sobic003G333000--Sobic002G201100 Sobic006G001400 Sobic006G001400 Sobic003G333000--Sobic006G001400 Sobic001G478100 Sobic001G478100 Sobic003G333000--Sobic001G478100 Sobic003G333000--Sobic005G227050 Sobic007G123200--Sobic003G029300 Sobic003G176200 Sobic003G176200 Sobic007G123200--Sobic003G176200 Sobic001G275800 Sobic001G275800 Sobic007G123200--Sobic001G275800 Sobic007G123200--Sobic008G008500 Sobic007G123200--Sobic007G090415 Sobic007G123200--Sobic005G227050 Sobic004G151900 Sobic004G151900 Sobic007G123200--Sobic004G151900 Sobic007G123200--Sobic008G130700 Sobic001G358900 Sobic001G358900 Sobic007G123200--Sobic001G358900 Sobic001G021500 Sobic001G021500 Sobic004G243400--Sobic001G021500 Sobic009G055900 Sobic009G055900 Sobic004G243400--Sobic009G055900 Sobic009G144200 Sobic009G144200 Sobic004G243400--Sobic009G144200 Sobic001G405000 Sobic001G405000 Sobic004G243400--Sobic001G405000 Sobic003G098600 Sobic003G098600 Sobic004G243400--Sobic003G098600 Sobic002G003200 Sobic002G003200 Sobic004G243400--Sobic002G003200 Sobic004G243400--Sobic003G176200 Sobic004G243400--Sobic004G044100 Sobic004G243400--Sobic008G008500 Sobic003G029300--Sobic007G154800 Sobic003G029300--Sobic007G123200 Sobic009G102800 Sobic009G102800 Sobic003G029300--Sobic009G102800 Sobic004G240900 Sobic004G240900 Sobic003G029300--Sobic004G240900 Sobic003G029300--Sobic004G193800 Sobic003G029300--Sobic004G151900 Sobic006G062400 Sobic006G062400 Sobic003G029300--Sobic006G062400 Sobic004G016500 Sobic004G016500 Sobic003G029300--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G029300--Sobic001G046600 Sobic008G143600--Sobic009G055900 Sobic002G246000 Sobic002G246000 Sobic008G143600--Sobic002G246000 Sobic002G377300 Sobic002G377300 Sobic008G143600--Sobic002G377300 Sobic008G143600--Sobic008G008500 Sobic004G109000 Sobic004G109000 Sobic008G143600--Sobic004G109000 Sobic008G143600--Sobic006G001400 Sobic007G211100 Sobic007G211100 Sobic008G143600--Sobic007G211100 Sobic002G209800 Sobic002G209800 Sobic008G143600--Sobic002G209800 Sobic010G165100 Sobic010G165100 Sobic008G143600--Sobic010G165100 Sobic007G090415--Sobic008G130700 Sobic007G090415--Sobic001G275800 Sobic005G141000 Sobic005G141000 Sobic007G090415--Sobic005G141000 Sobic005G203600 Sobic005G203600 Sobic007G090415--Sobic005G203600 Sobic007G090415--Sobic002G190100 Sobic005G020200 Sobic005G020200 Sobic007G090415--Sobic005G020200 Sobic007G090415--Sobic007G123200 Sobic007G090415--Sobic008G008500 Sobic007G090415--Sobic001G215300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.