Gene annotation
Transcriptome id Sobic.008G190500.1
Synonym Sb08g023070, AHA11, HA11
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plasma membrane ATPase, putative, expressed
UniProt C5YT23
Pfam PF00690 PF00702 PF00122
Panther DB PTHR24093 PTHR24093:SF331
NCBI CDD -
KEGG Orthology K01535; PMA1, H+-transporting ATPase
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G62670 : H(+)-ATPase 11
RAP-DB (Rice) LOC_Os12g44150.1 : plasma membrane ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a007653 , Zm00025a025067 , Zm00025a045279
Brachypodium KQK13730 , KQJ85604 , PNT62257 , KQK13731
Barley HORVU4Hr1G004820.38 , HORVU4Hr1G004820.39 , HORVU4Hr1G004820.30 , HORVU4Hr1G004820.31 , HORVU4Hr1G004820.32 , HORVU4Hr1G004820.33 , HORVU4Hr1G004820.34 , HORVU4Hr1G004820.35 , HORVU4Hr1G004820.36 , HORVU4Hr1G004820.8 , HORVU4Hr1G004820.6 , HORVU4Hr1G004820.7 , HORVU5Hr1G000780.12 , HORVU5Hr1G000780.13 , HORVU5Hr1G000780.10 , HORVU5Hr1G000780.11 , HORVU5Hr1G000780.16 , HORVU5Hr1G000780.17 , HORVU5Hr1G000780.14 , HORVU5Hr1G000780.15 , HORVU5Hr1G000780.18 , HORVU5Hr1G000780.19 , HORVU5Hr1G000780.20 , HORVU5Hr1G000780.21 , HORVU5Hr1G000780.1 , HORVU5Hr1G000780.2 , HORVU5Hr1G000780.3 , HORVU5Hr1G000780.6 , HORVU5Hr1G000780.7 , HORVU4Hr1G004820.12 , HORVU4Hr1G004820.13 , HORVU4Hr1G004820.10 , HORVU4Hr1G004820.11 , HORVU4Hr1G004820.16 , HORVU4Hr1G004820.17 , HORVU4Hr1G004820.14 , HORVU4Hr1G004820.15 , HORVU4Hr1G004820.18 , HORVU4Hr1G004820.19 , HORVU4Hr1G004820.29 , HORVU4Hr1G004820.28 , HORVU4Hr1G004820.23 , HORVU4Hr1G004820.22 , HORVU4Hr1G004820.21 , HORVU4Hr1G004820.20 , HORVU4Hr1G004820.27 , HORVU4Hr1G004820.26 , HORVU4Hr1G004820.25 , HORVU4Hr1G004820.24 , HORVU4Hr1G004820.4 , HORVU4Hr1G004820.5 , HORVU5Hr1G000780.8 , HORVU5Hr1G000780.9 , HORVU5Hr1G000780.4 , HORVU5Hr1G000780.5
Wheat TraesCSU02G073200 , TraesCSU02G073200 , TraesCS4A02G282900 , TraesCS4A02G282900 , TraesCS4A02G282900 , TraesCS4A02G282900 , TraesCS4A02G282900 , TraesCS5A02G004200 , TraesCS4A02G283100 , TraesCS4A02G283100 , TraesCS4A02G283100 , TraesCS5A02G004300 , TraesCS4B02G031000 , TraesCS4B02G031000 , TraesCS5A02G004300 , TraesCS4D02G027900 , TraesCSU02G073200 , TraesCSU02G073200 , TraesCSU02G073200 , TraesCSU02G073200 , TraesCSU02G073200 , TraesCS5D02G013100 , TraesCS5D02G013100 , TraesCS4A02G282900
Populus PNT00769 , PNT09922 , PNT09923 , PNT09924 , PNT09925 , PNT44318 , PNT32071 , PNS93486 , PNT00770 , PNT00771


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cDNA sequences
Sobic.008G190500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G210900 expressed protein -
2 Sobic.008G086200 expressed protein -
3 Sobic.010G135300 expressed protein -
4 Sobic.003G077500 expressed protein -
5 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
6 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
7 Sobic.009G123500 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed -
8 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
9 Sobic.001G315400 expressed protein -
10 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
11 Sobic.006G167300 AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
13 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -
14 Sobic.004G205500 expressed protein -
15 Sobic.004G178400 zinc finger, C3HC4 type domain containing protein, expressed K19039: E3 ubiquitin-protein ligase ATL7/58/59
16 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
17 Sobic.002G007200 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.009G175200 expressed protein -
19 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
20 Sobic.001G352600 expressed protein -


Gene co-expression network
sample Sobic008G190500 Sobic008G190500 Sobic007G210900 Sobic007G210900 Sobic008G190500--Sobic007G210900 Sobic008G086200 Sobic008G086200 Sobic008G190500--Sobic008G086200 Sobic010G135300 Sobic010G135300 Sobic008G190500--Sobic010G135300 Sobic003G077500 Sobic003G077500 Sobic008G190500--Sobic003G077500 Sobic001G021500 Sobic001G021500 Sobic008G190500--Sobic001G021500 Sobic003G023400 Sobic003G023400 Sobic008G190500--Sobic003G023400 Sobic009G123500 Sobic009G123500 Sobic008G190500--Sobic009G123500 Sobic003G420800 Sobic003G420800 Sobic008G190500--Sobic003G420800 Sobic001G315400 Sobic001G315400 Sobic008G190500--Sobic001G315400 Sobic007G210900--Sobic003G420800 Sobic004G154600 Sobic004G154600 Sobic007G210900--Sobic004G154600 Sobic004G199700 Sobic004G199700 Sobic007G210900--Sobic004G199700 Sobic002G002100 Sobic002G002100 Sobic007G210900--Sobic002G002100 Sobic002G348700 Sobic002G348700 Sobic007G210900--Sobic002G348700 Sobic004G205500 Sobic004G205500 Sobic007G210900--Sobic004G205500 Sobic006G167300 Sobic006G167300 Sobic007G210900--Sobic006G167300 Sobic007G210900--Sobic008G190500 Sobic002G179700 Sobic002G179700 Sobic007G210900--Sobic002G179700 Sobic004G225700 Sobic004G225700 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic003G375000 Sobic003G375000 Sobic008G086200--Sobic003G375000 Sobic008G086200--Sobic009G123500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic002G142500 Sobic002G142500 Sobic010G135300--Sobic002G142500 Sobic006G257200 Sobic006G257200 Sobic010G135300--Sobic006G257200 Sobic002G098500 Sobic002G098500 Sobic010G135300--Sobic002G098500 Sobic001G113800 Sobic001G113800 Sobic010G135300--Sobic001G113800 Sobic008G038200 Sobic008G038200 Sobic010G135300--Sobic008G038200 Sobic001G019200 Sobic001G019200 Sobic010G135300--Sobic001G019200 Sobic001G047200 Sobic001G047200 Sobic010G135300--Sobic001G047200 Sobic002G293700 Sobic002G293700 Sobic010G135300--Sobic002G293700 Sobic001G298800 Sobic001G298800 Sobic010G135300--Sobic001G298800 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic004G243400 Sobic004G243400 Sobic001G021500--Sobic004G243400 Sobic002G377300 Sobic002G377300 Sobic001G021500--Sobic002G377300 Sobic009G055900 Sobic009G055900 Sobic001G021500--Sobic009G055900 Sobic003G165800 Sobic003G165800 Sobic001G021500--Sobic003G165800 Sobic001G021500--Sobic008G190500 Sobic003G347300 Sobic003G347300 Sobic001G021500--Sobic003G347300 Sobic010G123300 Sobic010G123300 Sobic001G021500--Sobic010G123300 Sobic009G144200 Sobic009G144200 Sobic001G021500--Sobic009G144200 Sobic001G021500--Sobic007G210900 Sobic004G193800 Sobic004G193800 Sobic003G023400--Sobic004G193800 Sobic002G049000 Sobic002G049000 Sobic003G023400--Sobic002G049000 Sobic006G210200 Sobic006G210200 Sobic003G023400--Sobic006G210200 Sobic003G185250 Sobic003G185250 Sobic003G023400--Sobic003G185250 Sobic002G090400 Sobic002G090400 Sobic003G023400--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic003G023400--Sobic008G068800 Sobic003G023400--Sobic001G367100 Sobic001G094000 Sobic001G094000 Sobic003G023400--Sobic001G094000 Sobic003G163100 Sobic003G163100 Sobic003G023400--Sobic003G163100 Sobic009G123500--Sobic008G086200 Sobic005G159600 Sobic005G159600 Sobic009G123500--Sobic005G159600 Sobic003G277900 Sobic003G277900 Sobic009G123500--Sobic003G277900 Sobic009G123500--Sobic003G347300 Sobic009G123500--Sobic008G190500 Sobic004G006700 Sobic004G006700 Sobic009G123500--Sobic004G006700 Sobic001G435201 Sobic001G435201 Sobic009G123500--Sobic001G435201 Sobic009G123500--Sobic010G118700 Sobic004G053300 Sobic004G053300 Sobic009G123500--Sobic004G053300 Sobic003G420800--Sobic007G210900 Sobic002G315000 Sobic002G315000 Sobic003G420800--Sobic002G315000 Sobic005G204100 Sobic005G204100 Sobic003G420800--Sobic005G204100 Sobic009G154100 Sobic009G154100 Sobic003G420800--Sobic009G154100 Sobic003G420800--Sobic002G179700 Sobic003G333000 Sobic003G333000 Sobic003G420800--Sobic003G333000 Sobic003G420800--Sobic003G174900 Sobic001G482300 Sobic001G482300 Sobic003G420800--Sobic001G482300 Sobic003G420800--Sobic001G047200 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200
Octagon: transcription factors


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