Gene annotation
Transcriptome id Sobic.001G047200.1
Synonym Sb01g004360
Functional annotation carboxyl-terminal peptidase, putative, expressed
UniProt C5WW59
Pfam PF14365 PF03080
Panther DB PTHR31589 PTHR31589:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55360 : Protein of Unknown Function (DUF239)
RAP-DB (Rice) LOC_Os03g59240.1 : carboxyl-terminal peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a008658 , Zm00025a045353 , Zm00025a048469
Brachypodium KQK20412 , KQK12586
Barley HORVU5Hr1G109680.5 , HORVU5Hr1G109680.4 , HORVU5Hr1G109680.7 , HORVU5Hr1G109680.6 , HORVU5Hr1G109680.1 , HORVU5Hr1G109680.3 , HORVU5Hr1G109680.2 , HORVU2Hr1G037700.1 , HORVU2Hr1G037700.11 , HORVU2Hr1G037700.10 , HORVU2Hr1G037700.9 , HORVU2Hr1G037700.8 , HORVU2Hr1G037700.3 , HORVU2Hr1G037700.2 , HORVU2Hr1G037700.5 , HORVU2Hr1G037700.4 , HORVU2Hr1G037700.7 , HORVU2Hr1G037700.6
Wheat TraesCS5B02G466200 , TraesCS4A02G327000 , TraesCS5A02G457200 , TraesCS5D02G468000 , TraesCS2D02G203000 , TraesCS2D02G203000 , TraesCS2A02G184700 , TraesCS2B02G222700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
2 Sobic.002G142500 expressed protein -
3 Sobic.010G135300 expressed protein -
4 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
6 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
8 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
9 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
10 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
11 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
12 Sobic.003G077500 expressed protein -
13 Sobic.006G167300 AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
15 Sobic.001G371700 zinc finger protein, putative, expressed -
16 Sobic.006G274866 - -
17 Sobic.008G048933 - -
18 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
19 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G019200 H-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -


Gene co-expression network
sample Sobic001G047200 Sobic001G047200 Sobic002G311000 Sobic002G311000 Sobic001G047200--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic001G047200--Sobic002G142500 Sobic010G135300 Sobic010G135300 Sobic001G047200--Sobic010G135300 Sobic002G377300 Sobic002G377300 Sobic001G047200--Sobic002G377300 Sobic003G096300 Sobic003G096300 Sobic001G047200--Sobic003G096300 Sobic001G482300 Sobic001G482300 Sobic001G047200--Sobic001G482300 Sobic003G420800 Sobic003G420800 Sobic001G047200--Sobic003G420800 Sobic001G157100 Sobic001G157100 Sobic001G047200--Sobic001G157100 Sobic009G148200 Sobic009G148200 Sobic001G047200--Sobic009G148200 Sobic006G241800 Sobic006G241800 Sobic002G311000--Sobic006G241800 Sobic003G291000 Sobic003G291000 Sobic002G311000--Sobic003G291000 Sobic003G078300 Sobic003G078300 Sobic002G311000--Sobic003G078300 Sobic002G311000--Sobic002G142500 Sobic002G045200 Sobic002G045200 Sobic002G311000--Sobic002G045200 Sobic010G211800 Sobic010G211800 Sobic002G311000--Sobic010G211800 Sobic001G074100 Sobic001G074100 Sobic002G311000--Sobic001G074100 Sobic010G165100 Sobic010G165100 Sobic002G311000--Sobic010G165100 Sobic006G257200 Sobic006G257200 Sobic002G311000--Sobic006G257200 Sobic006G274866 Sobic006G274866 Sobic002G142500--Sobic006G274866 Sobic002G142500--Sobic006G257200 Sobic001G389600 Sobic001G389600 Sobic002G142500--Sobic001G389600 Sobic002G142500--Sobic010G165100 Sobic002G142500--Sobic002G311000 Sobic009G235700 Sobic009G235700 Sobic002G142500--Sobic009G235700 Sobic002G142500--Sobic002G045200 Sobic002G246000 Sobic002G246000 Sobic002G142500--Sobic002G246000 Sobic002G142500--Sobic006G241800 Sobic010G135300--Sobic002G142500 Sobic010G135300--Sobic006G257200 Sobic002G098500 Sobic002G098500 Sobic010G135300--Sobic002G098500 Sobic001G113800 Sobic001G113800 Sobic010G135300--Sobic001G113800 Sobic008G038200 Sobic008G038200 Sobic010G135300--Sobic008G038200 Sobic001G019200 Sobic001G019200 Sobic010G135300--Sobic001G019200 Sobic010G135300--Sobic001G047200 Sobic002G293700 Sobic002G293700 Sobic010G135300--Sobic002G293700 Sobic001G298800 Sobic001G298800 Sobic010G135300--Sobic001G298800 Sobic009G055900 Sobic009G055900 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic002G377300--Sobic010G165100 Sobic002G377300--Sobic002G142500 Sobic009G231100 Sobic009G231100 Sobic002G377300--Sobic009G231100 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G225000 Sobic002G225000 Sobic002G377300--Sobic002G225000 Sobic002G377300--Sobic002G246000 Sobic003G096300--Sobic008G038200 Sobic003G096300--Sobic002G098500 Sobic003G096300--Sobic001G482300 Sobic002G216600 Sobic002G216600 Sobic003G096300--Sobic002G216600 Sobic007G065300 Sobic007G065300 Sobic003G096300--Sobic007G065300 Sobic005G204100 Sobic005G204100 Sobic003G096300--Sobic005G204100 Sobic003G096300--Sobic001G047200 Sobic001G384700 Sobic001G384700 Sobic003G096300--Sobic001G384700 Sobic001G434100 Sobic001G434100 Sobic003G096300--Sobic001G434100 Sobic001G482300--Sobic003G096300 Sobic002G315000 Sobic002G315000 Sobic001G482300--Sobic002G315000 Sobic001G482300--Sobic003G420800 Sobic001G482300--Sobic001G047200 Sobic002G064400 Sobic002G064400 Sobic001G482300--Sobic002G064400 Sobic001G482300--Sobic005G204100 Sobic009G083300 Sobic009G083300 Sobic001G482300--Sobic009G083300 Sobic001G482300--Sobic008G038200 Sobic001G370000 Sobic001G370000 Sobic001G482300--Sobic001G370000 Sobic007G210900 Sobic007G210900 Sobic003G420800--Sobic007G210900 Sobic003G420800--Sobic002G315000 Sobic003G420800--Sobic005G204100 Sobic009G154100 Sobic009G154100 Sobic003G420800--Sobic009G154100 Sobic002G179700 Sobic002G179700 Sobic003G420800--Sobic002G179700 Sobic003G333000 Sobic003G333000 Sobic003G420800--Sobic003G333000 Sobic003G174900 Sobic003G174900 Sobic003G420800--Sobic003G174900 Sobic003G420800--Sobic001G482300 Sobic003G420800--Sobic001G047200 Sobic001G372900 Sobic001G372900 Sobic001G157100--Sobic001G372900 Sobic001G296100 Sobic001G296100 Sobic001G157100--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G157100--Sobic003G077500 Sobic009G064900 Sobic009G064900 Sobic001G157100--Sobic009G064900 Sobic001G487200 Sobic001G487200 Sobic001G157100--Sobic001G487200 Sobic001G157100--Sobic001G047200 Sobic006G167300 Sobic006G167300 Sobic001G157100--Sobic006G167300 Sobic001G499200 Sobic001G499200 Sobic001G157100--Sobic001G499200 Sobic001G157100--Sobic007G210900 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.