Gene annotation
Transcriptome id Sobic.009G212000.1,Sobic.009G212000.2
Synonym Sb09g026760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
S1 RNA binding domain containing protein, expressed
UniProt A0A1B6PAB0 , A0A1Z5R3N4
Pfam PF00575
Panther DB PTHR15838 PTHR15838:SF2
NCBI CDD -
KEGG Orthology K02945; RP-S1, small subunit ribosomal protein S1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G71720 : Nucleic acid-binding proteins superfamily
RAP-DB (Rice) LOC_Os05g45920.1 : S1 RNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044365
Brachypodium KQK05198
Barley HORVU1Hr1G080410.8 , HORVU1Hr1G080410.9 , HORVU1Hr1G080410.5 , HORVU1Hr1G080410.6 , HORVU1Hr1G080410.7 , HORVU1Hr1G080410.1 , HORVU1Hr1G080410.2 , HORVU1Hr1G080410.3 , HORVU1Hr1G080410.18 , HORVU1Hr1G080410.19 , HORVU1Hr1G080410.16 , HORVU1Hr1G080410.14 , HORVU1Hr1G080410.15 , HORVU1Hr1G080410.12 , HORVU1Hr1G080410.13 , HORVU1Hr1G080410.10 , HORVU1Hr1G080410.11 , HORVU1Hr1G080410.20
Wheat TraesCS1B02G374000 , TraesCS1D02G361700 , TraesCS1A02G357400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
2 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
3 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
4 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
6 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
7 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
8 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
9 Sobic.002G200200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
10 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
11 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
12 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
13 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
14 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
15 Sobic.003G305300 - -
16 Sobic.004G015700 serine/threonine-protein kinase receptor precursor, putative, expressed -
17 Sobic.006G248200 - -
18 Sobic.004G119500 peptidase, putative, expressed K03100: signal peptidase I
19 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
20 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G212000 Sobic009G212000 Sobic002G305700 Sobic002G305700 Sobic009G212000--Sobic002G305700 Sobic003G202300 Sobic003G202300 Sobic009G212000--Sobic003G202300 Sobic004G191200 Sobic004G191200 Sobic009G212000--Sobic004G191200 Sobic002G190100 Sobic002G190100 Sobic009G212000--Sobic002G190100 Sobic003G256200 Sobic003G256200 Sobic009G212000--Sobic003G256200 Sobic010G095200 Sobic010G095200 Sobic009G212000--Sobic010G095200 Sobic001G453300 Sobic001G453300 Sobic009G212000--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic009G212000--Sobic004G298100 Sobic002G200200 Sobic002G200200 Sobic009G212000--Sobic002G200200 Sobic001G191000 Sobic001G191000 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic002G305700--Sobic003G256200 Sobic006G107600 Sobic006G107600 Sobic002G305700--Sobic006G107600 Sobic002G305700--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic002G305700--Sobic009G212000 Sobic001G240000 Sobic001G240000 Sobic002G305700--Sobic001G240000 Sobic003G202300--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic003G202300--Sobic008G030000 Sobic003G202300--Sobic001G453300 Sobic004G168500 Sobic004G168500 Sobic003G202300--Sobic004G168500 Sobic003G202300--Sobic009G212000 Sobic001G027600 Sobic001G027600 Sobic003G202300--Sobic001G027600 Sobic001G094200 Sobic001G094200 Sobic003G202300--Sobic001G094200 Sobic004G317900 Sobic004G317900 Sobic003G202300--Sobic004G317900 Sobic007G185100 Sobic007G185100 Sobic003G202300--Sobic007G185100 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic003G246400 Sobic003G246400 Sobic004G191200--Sobic003G246400 Sobic004G191200--Sobic002G305700 Sobic006G025700 Sobic006G025700 Sobic002G190100--Sobic006G025700 Sobic006G263800 Sobic006G263800 Sobic002G190100--Sobic006G263800 Sobic008G130700 Sobic008G130700 Sobic002G190100--Sobic008G130700 Sobic002G242600 Sobic002G242600 Sobic002G190100--Sobic002G242600 Sobic002G190100--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic002G190100--Sobic004G044000 Sobic004G253800 Sobic004G253800 Sobic002G190100--Sobic004G253800 Sobic009G059100 Sobic009G059100 Sobic002G190100--Sobic009G059100 Sobic001G120000 Sobic001G120000 Sobic002G190100--Sobic001G120000 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic004G164100 Sobic004G164100 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic002G251400 Sobic002G251400 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G383900 Sobic001G383900 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic004G298100--Sobic003G256200 Sobic004G298100--Sobic001G391400 Sobic004G298100--Sobic003G246400 Sobic004G298100--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic004G298100--Sobic004G116100 Sobic004G298100--Sobic001G240000 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G298100--Sobic004G317900 Sobic002G200200--Sobic010G095200 Sobic002G200200--Sobic004G298100 Sobic002G200200--Sobic001G122400 Sobic002G200200--Sobic001G240000 Sobic002G200200--Sobic003G256200 Sobic002G158800 Sobic002G158800 Sobic002G200200--Sobic002G158800 Sobic008G039600 Sobic008G039600 Sobic002G200200--Sobic008G039600 Sobic002G200200--Sobic001G333000 Sobic006G106400 Sobic006G106400 Sobic002G200200--Sobic006G106400
Octagon: transcription factors


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