Gene annotation
Transcriptome id Sobic.003G202300.1
Synonym Sb03g026440
Functional annotation S1 RNA binding domain containing protein, expressed
UniProt C5XPH8
Pfam PF00575
Panther DB PTHR15838 PTHR15838:SF1
NCBI CDD -
KEGG Orthology K02945; RP-S1, small subunit ribosomal protein S1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G71720 : Nucleic acid-binding proteins superfamily
RAP-DB (Rice) LOC_Os01g40640.1 : S1 RNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028534
Brachypodium -
Barley -
Wheat TraesCS3A02G211400 , TraesCS3A02G211400 , TraesCS3A02G211400 , TraesCS3D02G214100 , TraesCS3D02G214100 , TraesCS3D02G214100 , TraesCS3D02G214100 , TraesCS3B02G241800
Populus -


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cDNA sequences
Sobic.003G202300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
2 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
3 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
4 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
5 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
6 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
7 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
8 Sobic.004G317900 expressed protein -
9 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
10 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
11 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
12 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
13 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
14 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
15 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
16 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
17 Sobic.007G211100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03216: trmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase
18 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
20 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4


Gene co-expression network
sample Sobic003G202300 Sobic003G202300 Sobic004G191200 Sobic004G191200 Sobic003G202300--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic003G202300--Sobic008G030000 Sobic001G453300 Sobic001G453300 Sobic003G202300--Sobic001G453300 Sobic004G168500 Sobic004G168500 Sobic003G202300--Sobic004G168500 Sobic009G212000 Sobic009G212000 Sobic003G202300--Sobic009G212000 Sobic001G027600 Sobic001G027600 Sobic003G202300--Sobic001G027600 Sobic001G094200 Sobic001G094200 Sobic003G202300--Sobic001G094200 Sobic004G317900 Sobic004G317900 Sobic003G202300--Sobic004G317900 Sobic007G185100 Sobic007G185100 Sobic003G202300--Sobic007G185100 Sobic004G191200--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic004G191200--Sobic006G280050 Sobic004G191200--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic003G246400 Sobic003G246400 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic003G295800 Sobic003G295800 Sobic008G030000--Sobic003G295800 Sobic009G098100 Sobic009G098100 Sobic008G030000--Sobic009G098100 Sobic009G001500 Sobic009G001500 Sobic008G030000--Sobic009G001500 Sobic003G383600 Sobic003G383600 Sobic008G030000--Sobic003G383600 Sobic008G030000--Sobic001G453300 Sobic001G357200 Sobic001G357200 Sobic008G030000--Sobic001G357200 Sobic008G030000--Sobic007G185100 Sobic001G383900 Sobic001G383900 Sobic008G030000--Sobic001G383900 Sobic007G013400 Sobic007G013400 Sobic008G030000--Sobic007G013400 Sobic001G453300--Sobic001G027600 Sobic001G427000 Sobic001G427000 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic004G168500--Sobic001G453300 Sobic004G168500--Sobic001G427000 Sobic004G168500--Sobic003G246400 Sobic004G168500--Sobic001G076500 Sobic004G168500--Sobic001G027600 Sobic004G168500--Sobic010G233800 Sobic004G168500--Sobic003G256200 Sobic004G168500--Sobic001G383900 Sobic004G168500--Sobic008G030000 Sobic009G212000--Sobic002G305700 Sobic009G212000--Sobic003G202300 Sobic009G212000--Sobic004G191200 Sobic002G190100 Sobic002G190100 Sobic009G212000--Sobic002G190100 Sobic009G212000--Sobic003G256200 Sobic010G095200 Sobic010G095200 Sobic009G212000--Sobic010G095200 Sobic009G212000--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic009G212000--Sobic004G298100 Sobic002G200200 Sobic002G200200 Sobic009G212000--Sobic002G200200 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic001G094200--Sobic003G256200 Sobic001G094200--Sobic003G246400 Sobic001G094200--Sobic010G233800 Sobic001G094200--Sobic004G191200 Sobic001G094200--Sobic001G453300 Sobic001G094200--Sobic001G191000 Sobic001G094200--Sobic001G427000 Sobic001G094200--Sobic001G076500 Sobic001G411300 Sobic001G411300 Sobic001G094200--Sobic001G411300 Sobic004G317900--Sobic003G246400 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic007G185100--Sobic010G233800 Sobic010G215500 Sobic010G215500 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic007G185100--Sobic003G328200 Sobic007G185100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic007G185100--Sobic004G076000
Octagon: transcription factors


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