Gene annotation
Transcriptome id Sobic.006G107600.1
Synonym Sb06g019030
Functional annotation plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
UniProt C5Y9V5
Pfam PF04839
Panther DB PTHR35108 PTHR35108:SF1
NCBI CDD -
KEGG Orthology K19032; 30S ribosomal protein 3
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G68590 : Ribosomal protein PSRP-3/Ycf65
RAP-DB (Rice) LOC_Os04g38750.1 : plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a056224 , Zm00025a011115
Brachypodium KQJ82983
Barley HORVU2Hr1G080480.4 , HORVU2Hr1G080480.5 , HORVU2Hr1G080480.1 , HORVU2Hr1G080480.2 , HORVU2Hr1G080480.3
Wheat TraesCS2A02G338100 , TraesCS2B02G343900 , TraesCS2D02G324900
Populus -


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cDNA sequences
Sobic.006G107600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
2 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
3 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
5 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
6 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
7 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
8 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
9 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
10 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
12 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
13 Sobic.002G251400 expressed protein -
14 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
15 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
16 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.003G386300 expressed protein -
18 Sobic.003G324700 expressed protein -
19 Sobic.003G439000 rubredoxin family protein, putative, expressed -
20 Sobic.006G248200 - -


Gene co-expression network
sample Sobic006G107600 Sobic006G107600 Sobic003G256200 Sobic003G256200 Sobic006G107600--Sobic003G256200 Sobic001G240000 Sobic001G240000 Sobic006G107600--Sobic001G240000 Sobic007G171800 Sobic007G171800 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic001G391400 Sobic001G391400 Sobic006G107600--Sobic001G391400 Sobic002G305700 Sobic002G305700 Sobic006G107600--Sobic002G305700 Sobic001G122400 Sobic001G122400 Sobic006G107600--Sobic001G122400 Sobic001G191000 Sobic001G191000 Sobic006G107600--Sobic001G191000 Sobic001G453300 Sobic001G453300 Sobic006G107600--Sobic001G453300 Sobic003G256200--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic003G256200--Sobic004G298100 Sobic003G246400 Sobic003G246400 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G391400--Sobic001G240000 Sobic001G391400--Sobic001G453300 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic002G305700--Sobic003G256200 Sobic002G305700--Sobic006G107600 Sobic004G191200 Sobic004G191200 Sobic002G305700--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic009G212000 Sobic009G212000 Sobic002G305700--Sobic009G212000 Sobic002G305700--Sobic001G240000 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G191000--Sobic001G027600 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic001G191000--Sobic006G107600 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G383900 Sobic001G383900 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400
Octagon: transcription factors


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