Gene annotation
Transcriptome id Sobic.002G179700.1
Synonym Sb02g022830, KCS17
Functional annotation 3-ketoacyl-CoA synthase precursor, putative, expressed
UniProt C5XAM8
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF29
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G34510 : 3-ketoacyl-CoA synthase 17
RAP-DB (Rice) LOC_Os09g19650.1 : 3-ketoacyl-CoA synthase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a046653
Brachypodium KQJ89941 , KQK18680
Barley HORVU5Hr1G056870.3 , HORVU3Hr1G054510.1 , HORVU5Hr1G056870.2 , HORVU1Hr1G086760.1 , HORVU5Hr1G056870.1 , HORVU5Hr1G056870.5 , HORVU5Hr1G056870.4 , HORVU5Hr1G056870.6
Wheat TraesCS5B02G187900 , TraesCS5D02G195500 , TraesCS5A02G195500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G154100 expressed protein -
2 Sobic.005G227050 - -
3 Sobic.005G209900 expressed protein -
4 Sobic.001G356400 expansin precursor, putative, expressed -
5 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
6 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
8 Sobic.002G315000 - -
9 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
10 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -
11 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.007G189400 BEE 1, putative, expressed -
13 Sobic.007G210900 expressed protein -
14 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
15 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
17 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
18 Sobic.007G103800 Leucine Rich Repeat family protein, expressed -
19 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
20 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic002G179700 Sobic002G179700 Sobic009G154100 Sobic009G154100 Sobic002G179700--Sobic009G154100 Sobic005G227050 Sobic005G227050 Sobic002G179700--Sobic005G227050 Sobic005G209900 Sobic005G209900 Sobic002G179700--Sobic005G209900 Sobic001G356400 Sobic001G356400 Sobic002G179700--Sobic001G356400 Sobic005G196500 Sobic005G196500 Sobic002G179700--Sobic005G196500 Sobic006G233600 Sobic006G233600 Sobic002G179700--Sobic006G233600 Sobic010G107200 Sobic010G107200 Sobic002G179700--Sobic010G107200 Sobic002G315000 Sobic002G315000 Sobic002G179700--Sobic002G315000 Sobic002G072700 Sobic002G072700 Sobic002G179700--Sobic002G072700 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic007G189400 Sobic007G189400 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic006G032800 Sobic006G032800 Sobic009G154100--Sobic006G032800 Sobic005G227050--Sobic005G209900 Sobic005G227050--Sobic005G196500 Sobic005G227050--Sobic009G154100 Sobic005G227050--Sobic002G179700 Sobic005G227050--Sobic001G356400 Sobic005G227050--Sobic010G107200 Sobic006G001400 Sobic006G001400 Sobic005G227050--Sobic006G001400 Sobic007G103800 Sobic007G103800 Sobic005G227050--Sobic007G103800 Sobic007G123200 Sobic007G123200 Sobic005G227050--Sobic007G123200 Sobic005G209900--Sobic010G107200 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G209900--Sobic005G227050 Sobic005G209900--Sobic006G233600 Sobic005G209900--Sobic007G012800 Sobic007G142300 Sobic007G142300 Sobic005G209900--Sobic007G142300 Sobic005G147800 Sobic005G147800 Sobic005G209900--Sobic005G147800 Sobic005G209900--Sobic002G179700 Sobic001G356400--Sobic002G072700 Sobic001G356400--Sobic007G189400 Sobic001G356400--Sobic009G154100 Sobic001G356400--Sobic005G209900 Sobic001G356400--Sobic005G227050 Sobic001G356400--Sobic002G179700 Sobic001G228100 Sobic001G228100 Sobic001G356400--Sobic001G228100 Sobic005G188500 Sobic005G188500 Sobic001G356400--Sobic005G188500 Sobic001G356400--Sobic002G315000 Sobic005G196500--Sobic006G001400 Sobic005G196500--Sobic006G233600 Sobic005G196500--Sobic005G209900 Sobic005G196500--Sobic010G107200 Sobic005G196500--Sobic005G227050 Sobic005G196500--Sobic007G142300 Sobic004G001200 Sobic004G001200 Sobic005G196500--Sobic004G001200 Sobic003G333000 Sobic003G333000 Sobic005G196500--Sobic003G333000 Sobic004G291500 Sobic004G291500 Sobic005G196500--Sobic004G291500 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic001G478100 Sobic001G478100 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic006G233600--Sobic009G154100 Sobic006G233600--Sobic007G012800 Sobic010G107200--Sobic005G209900 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic010G107200--Sobic007G142300 Sobic001G389600 Sobic001G389600 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic010G107200--Sobic005G147800 Sobic002G315000--Sobic009G154100 Sobic002G315000--Sobic003G333000 Sobic003G420800 Sobic003G420800 Sobic002G315000--Sobic003G420800 Sobic002G315000--Sobic001G221900 Sobic002G315000--Sobic001G228100 Sobic002G315000--Sobic005G227050 Sobic002G315000--Sobic002G072700 Sobic001G482300 Sobic001G482300 Sobic002G315000--Sobic001G482300 Sobic002G315000--Sobic002G179700 Sobic002G072700--Sobic007G189400 Sobic002G072700--Sobic001G228100 Sobic005G029700 Sobic005G029700 Sobic002G072700--Sobic005G029700 Sobic005G204100 Sobic005G204100 Sobic002G072700--Sobic005G204100 Sobic002G139800 Sobic002G139800 Sobic002G072700--Sobic002G139800 Sobic007G142900 Sobic007G142900 Sobic002G072700--Sobic007G142900 Sobic002G072700--Sobic001G221900 Sobic009G259500 Sobic009G259500 Sobic002G072700--Sobic009G259500 Sobic006G247700 Sobic006G247700 Sobic002G072700--Sobic006G247700
Octagon: transcription factors


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