Gene annotation
Transcriptome id Sobic.007G189400.1
Synonym Sb07g025920
Functional annotation BEE 1, putative, expressed
UniProt C5YHP2
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF88
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50915 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os08g42470.1 : BEE 1, putative, expressed
MaizeGDB (Corn) Zm00025a005310 , Zm00025a030456 , Zm00025a047607
Brachypodium KQJ90964 , KQJ90965 , KQJ90960 , KQJ90961 , KQJ90962 , KQJ90963 , KQJ99166 , KQJ99165
Barley HORVU5Hr1G077390.5 , HORVU5Hr1G077390.4 , HORVU5Hr1G077390.7 , HORVU5Hr1G077390.1 , HORVU5Hr1G077390.3 , HORVU5Hr1G077390.2 , HORVU5Hr1G077390.9 , HORVU5Hr1G077390.8 , HORVU7Hr1G055180.2 , HORVU7Hr1G055180.3 , HORVU7Hr1G055180.1 , HORVU7Hr1G055180.6 , HORVU7Hr1G055180.7 , HORVU7Hr1G055180.4 , HORVU7Hr1G055180.5 , HORVU5Hr1G077390.11 , HORVU5Hr1G077390.10 , HORVU5Hr1G077390.12 , HORVU5Hr1G077390.15 , HORVU5Hr1G077390.14 , HORVU5Hr1G077390.17 , HORVU5Hr1G077390.16
Wheat TraesCS7B02G161700 , TraesCS7B02G161700 , TraesCS7B02G161700 , TraesCS5D02G300100 , TraesCS5A02G292900 , TraesCS5A02G292900 , TraesCS5B02G292100 , TraesCS5B02G292100 , TraesCS7A02G263700 , TraesCS7A02G263700 , TraesCS7D02G264600 , TraesCS7D02G264600 , TraesCS7D02G264600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
2 Sobic.005G188500 expressed protein -
3 Sobic.009G254500 protein kinase, putative, expressed -
4 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
5 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
6 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
7 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.001G119200 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.002G139800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G042600 expressed protein -
11 Sobic.004G248100 endoglucanase, putative, expressed -
12 Sobic.009G154100 expressed protein -
13 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -
14 Sobic.009G141300 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
16 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
17 Sobic.008G187400 - -
18 Sobic.002G011000 expressed protein -
19 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.001G356400 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic007G189400 Sobic007G189400 Sobic002G072700 Sobic002G072700 Sobic007G189400--Sobic002G072700 Sobic005G188500 Sobic005G188500 Sobic007G189400--Sobic005G188500 Sobic009G254500 Sobic009G254500 Sobic007G189400--Sobic009G254500 Sobic003G339600 Sobic003G339600 Sobic007G189400--Sobic003G339600 Sobic001G488400 Sobic001G488400 Sobic007G189400--Sobic001G488400 Sobic010G020600 Sobic010G020600 Sobic007G189400--Sobic010G020600 Sobic006G044200 Sobic006G044200 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic002G139800 Sobic002G139800 Sobic007G189400--Sobic002G139800 Sobic002G072700--Sobic007G189400 Sobic001G228100 Sobic001G228100 Sobic002G072700--Sobic001G228100 Sobic005G029700 Sobic005G029700 Sobic002G072700--Sobic005G029700 Sobic005G204100 Sobic005G204100 Sobic002G072700--Sobic005G204100 Sobic002G072700--Sobic002G139800 Sobic007G142900 Sobic007G142900 Sobic002G072700--Sobic007G142900 Sobic001G221900 Sobic001G221900 Sobic002G072700--Sobic001G221900 Sobic009G259500 Sobic009G259500 Sobic002G072700--Sobic009G259500 Sobic006G247700 Sobic006G247700 Sobic002G072700--Sobic006G247700 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic006G032800 Sobic006G032800 Sobic005G188500--Sobic006G032800 Sobic007G012800 Sobic007G012800 Sobic005G188500--Sobic007G012800 Sobic008G035400 Sobic008G035400 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G209900 Sobic005G209900 Sobic005G188500--Sobic005G209900 Sobic010G107200 Sobic010G107200 Sobic005G188500--Sobic010G107200 Sobic002G011000 Sobic002G011000 Sobic009G254500--Sobic002G011000 Sobic008G012600 Sobic008G012600 Sobic009G254500--Sobic008G012600 Sobic009G141300 Sobic009G141300 Sobic009G254500--Sobic009G141300 Sobic009G254500--Sobic001G119200 Sobic001G438500 Sobic001G438500 Sobic009G254500--Sobic001G438500 Sobic006G160800 Sobic006G160800 Sobic009G254500--Sobic006G160800 Sobic010G077700 Sobic010G077700 Sobic009G254500--Sobic010G077700 Sobic004G062100 Sobic004G062100 Sobic009G254500--Sobic004G062100 Sobic003G300400 Sobic003G300400 Sobic009G254500--Sobic003G300400 Sobic003G339600--Sobic010G020600 Sobic003G339600--Sobic003G300400 Sobic003G339600--Sobic009G254500 Sobic004G248100 Sobic004G248100 Sobic003G339600--Sobic004G248100 Sobic002G229700 Sobic002G229700 Sobic003G339600--Sobic002G229700 Sobic004G283800 Sobic004G283800 Sobic003G339600--Sobic004G283800 Sobic003G309400 Sobic003G309400 Sobic003G339600--Sobic003G309400 Sobic002G382500 Sobic002G382500 Sobic003G339600--Sobic002G382500 Sobic003G339600--Sobic007G189400 Sobic001G488400--Sobic005G188500 Sobic010G027700 Sobic010G027700 Sobic001G488400--Sobic010G027700 Sobic001G488400--Sobic006G044200 Sobic008G187400 Sobic008G187400 Sobic001G488400--Sobic008G187400 Sobic001G488400--Sobic001G438500 Sobic003G116100 Sobic003G116100 Sobic001G488400--Sobic003G116100 Sobic001G488400--Sobic007G189400 Sobic002G068400 Sobic002G068400 Sobic001G488400--Sobic002G068400 Sobic001G488400--Sobic008G035400 Sobic004G317200 Sobic004G317200 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic007G160300 Sobic007G160300 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic006G044200--Sobic008G035400 Sobic006G044200--Sobic001G488400 Sobic006G044200--Sobic005G188500 Sobic006G044200--Sobic004G248100 Sobic006G044200--Sobic006G032800 Sobic006G044200--Sobic003G116100 Sobic006G044200--Sobic007G189400 Sobic006G044200--Sobic002G382500 Sobic006G044200--Sobic002G068400 Sobic001G119200--Sobic002G011000 Sobic001G119200--Sobic009G254500 Sobic001G119200--Sobic010G077700 Sobic001G119200--Sobic006G160800 Sobic004G302700 Sobic004G302700 Sobic001G119200--Sobic004G302700 Sobic001G119200--Sobic009G141300 Sobic001G046400 Sobic001G046400 Sobic001G119200--Sobic001G046400 Sobic004G342000 Sobic004G342000 Sobic001G119200--Sobic004G342000 Sobic001G119200--Sobic001G438500 Sobic002G139800--Sobic001G438500 Sobic002G139800--Sobic004G062100 Sobic002G139800--Sobic009G254500 Sobic002G139800--Sobic002G011000 Sobic002G139800--Sobic007G189400 Sobic002G139800--Sobic008G187400 Sobic002G067500 Sobic002G067500 Sobic002G139800--Sobic002G067500 Sobic002G139800--Sobic002G072700 Sobic002G139800--Sobic009G141300
Octagon: transcription factors


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