Gene annotation
Transcriptome id Sobic.005G029700.1
Synonym BOP2, Sb05g002500
Functional annotation BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed
UniProt C5Y471
Pfam PF00651 PF11900
Panther DB PTHR24413 PTHR24413:SF113
NCBI CDD -
KEGG Orthology K14508; regulatory protein NPR1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G41370 : Ankyrin repeat family protein / BTB/POZ domain-containing protein
RAP-DB (Rice) LOC_Os12g04410.1 : BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed
MaizeGDB (Corn) Zm00025a053684 , Zm00025a033439 , Zm00025a026007 , Zm00025a039144 , Zm00025a013080
Brachypodium KQJ92368 , KQK11536 , PNT73598
Barley -
Wheat TraesCS5D02G139600 , TraesCS5D02G139600 , TraesCS5B02G133700 , TraesCS5B02G133700 , TraesCS5A02G134700 , TraesCS5A02G134700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G228100 gene responsible for epi-cuticular wax accumulation in sorghum.(PubMedID : 29379518)@GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.006G247700 Highest expression level in primordial inflorescence(PubMedID : 27501690)@-(PubMedID : 23108465)@OsSPL8 - SBP-box gene family member, expressed -
3 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
4 Sobic.007G189400 BEE 1, putative, expressed -
5 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.005G204100 kelch repeat protein, putative, expressed -
7 Sobic.003G339600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
8 Sobic.007G142900 receptor-like kinase, putative, expressed -
9 Sobic.002G315000 - -
10 Sobic.009G254500 protein kinase, putative, expressed -
11 Sobic.006G248300 "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress"(PubMedID : 24655390)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
12 Sobic.009G154100 expressed protein -
13 Sobic.009G037300 transferase family protein, putative, expressed -
14 Sobic.002G139800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.002G179700 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
16 Sobic.001G356400 expansin precursor, putative, expressed -
17 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.003G300200 expressed protein -
19 Sobic.006G181600 MYB family transcription factor, putative, expressed -
20 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase


Gene co-expression network
sample Sobic005G029700 Sobic005G029700 Sobic001G228100 Sobic001G228100 Sobic005G029700--Sobic001G228100 Sobic006G247700 Sobic006G247700 Sobic005G029700--Sobic006G247700 Sobic002G072700 Sobic002G072700 Sobic005G029700--Sobic002G072700 Sobic007G189400 Sobic007G189400 Sobic005G029700--Sobic007G189400 Sobic001G221900 Sobic001G221900 Sobic005G029700--Sobic001G221900 Sobic005G204100 Sobic005G204100 Sobic005G029700--Sobic005G204100 Sobic003G339600 Sobic003G339600 Sobic005G029700--Sobic003G339600 Sobic007G142900 Sobic007G142900 Sobic005G029700--Sobic007G142900 Sobic002G315000 Sobic002G315000 Sobic005G029700--Sobic002G315000 Sobic001G228100--Sobic005G029700 Sobic001G228100--Sobic002G072700 Sobic001G228100--Sobic006G247700 Sobic009G037300 Sobic009G037300 Sobic001G228100--Sobic009G037300 Sobic001G228100--Sobic001G221900 Sobic001G228100--Sobic007G189400 Sobic009G254500 Sobic009G254500 Sobic001G228100--Sobic009G254500 Sobic001G228100--Sobic003G339600 Sobic010G027700 Sobic010G027700 Sobic001G228100--Sobic010G027700 Sobic006G247700--Sobic005G029700 Sobic006G247700--Sobic001G228100 Sobic006G247700--Sobic002G072700 Sobic002G139800 Sobic002G139800 Sobic006G247700--Sobic002G139800 Sobic006G247700--Sobic009G037300 Sobic006G247700--Sobic009G254500 Sobic006G181600 Sobic006G181600 Sobic006G247700--Sobic006G181600 Sobic006G247700--Sobic007G189400 Sobic005G110900 Sobic005G110900 Sobic006G247700--Sobic005G110900 Sobic002G072700--Sobic007G189400 Sobic002G072700--Sobic001G228100 Sobic002G072700--Sobic005G029700 Sobic002G072700--Sobic005G204100 Sobic002G072700--Sobic002G139800 Sobic002G072700--Sobic007G142900 Sobic002G072700--Sobic001G221900 Sobic009G259500 Sobic009G259500 Sobic002G072700--Sobic009G259500 Sobic002G072700--Sobic006G247700 Sobic007G189400--Sobic002G072700 Sobic005G188500 Sobic005G188500 Sobic007G189400--Sobic005G188500 Sobic007G189400--Sobic009G254500 Sobic007G189400--Sobic003G339600 Sobic001G488400 Sobic001G488400 Sobic007G189400--Sobic001G488400 Sobic010G020600 Sobic010G020600 Sobic007G189400--Sobic010G020600 Sobic006G044200 Sobic006G044200 Sobic007G189400--Sobic006G044200 Sobic001G119200 Sobic001G119200 Sobic007G189400--Sobic001G119200 Sobic007G189400--Sobic002G139800 Sobic003G070600 Sobic003G070600 Sobic001G221900--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic001G221900--Sobic009G235700 Sobic001G221900--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic001G221900--Sobic010G078700 Sobic001G221900--Sobic003G339600 Sobic001G199400 Sobic001G199400 Sobic001G221900--Sobic001G199400 Sobic004G248100 Sobic004G248100 Sobic001G221900--Sobic004G248100 Sobic001G074000 Sobic001G074000 Sobic001G221900--Sobic001G074000 Sobic003G113500 Sobic003G113500 Sobic001G221900--Sobic003G113500 Sobic002G216600 Sobic002G216600 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic005G204100--Sobic002G072700 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic005G204100--Sobic001G221900 Sobic001G384700 Sobic001G384700 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic005G204100--Sobic007G189400 Sobic003G339600--Sobic010G020600 Sobic003G300400 Sobic003G300400 Sobic003G339600--Sobic003G300400 Sobic003G339600--Sobic009G254500 Sobic003G339600--Sobic004G248100 Sobic002G229700 Sobic002G229700 Sobic003G339600--Sobic002G229700 Sobic004G283800 Sobic004G283800 Sobic003G339600--Sobic004G283800 Sobic003G309400 Sobic003G309400 Sobic003G339600--Sobic003G309400 Sobic002G382500 Sobic002G382500 Sobic003G339600--Sobic002G382500 Sobic003G339600--Sobic007G189400 Sobic007G142900--Sobic002G072700 Sobic007G142900--Sobic005G204100 Sobic007G142900--Sobic009G259500 Sobic007G142900--Sobic007G189400 Sobic007G142900--Sobic002G216600 Sobic004G168600 Sobic004G168600 Sobic007G142900--Sobic004G168600 Sobic008G136100 Sobic008G136100 Sobic007G142900--Sobic008G136100 Sobic010G180800 Sobic010G180800 Sobic007G142900--Sobic010G180800 Sobic006G201600 Sobic006G201600 Sobic007G142900--Sobic006G201600 Sobic009G154100 Sobic009G154100 Sobic002G315000--Sobic009G154100 Sobic003G333000 Sobic003G333000 Sobic002G315000--Sobic003G333000 Sobic003G420800 Sobic003G420800 Sobic002G315000--Sobic003G420800 Sobic002G315000--Sobic001G221900 Sobic002G315000--Sobic001G228100 Sobic005G227050 Sobic005G227050 Sobic002G315000--Sobic005G227050 Sobic002G315000--Sobic002G072700 Sobic001G482300 Sobic001G482300 Sobic002G315000--Sobic001G482300 Sobic002G179700 Sobic002G179700 Sobic002G315000--Sobic002G179700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.