Gene annotation
Transcriptome id Sobic.005G196500.1,Sobic.005G196500.3,Sobic.005G196500.2
Synonym Sb05g025350
Functional annotation embryogenesis transmembrane protein, putative, expressed
UniProt A0A1B6PTN0 , A0A1B6PTK4 , A0A1Z5RJJ3
Pfam PF13962
Panther DB PTHR24177 PTHR24177:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54700 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os11g11350.1 : embryogenesis transmembrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a050583 , Zm00025a029258 , Zm00025a050516
Brachypodium KQK18773
Barley HORVU6Hr1G086570.2 , HORVU6Hr1G086570.3 , HORVU6Hr1G086570.1 , HORVU6Hr1G086570.6 , HORVU6Hr1G086570.4 , HORVU6Hr1G086570.5 , HORVU2Hr1G006360.3 , HORVU2Hr1G006360.2 , HORVU2Hr1G006360.1
Wheat TraesCS6B02G398100 , TraesCS6D02G337000 , TraesCS6D02G346500 , TraesCS6D02G346500 , TraesCS6A02G354800 , TraesCS2A02G041700 , TraesCS2B02G054200 , TraesCS6B02G387600 , TraesCS6B02G397300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -
2 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
3 Sobic.005G209900 expressed protein -
4 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.005G227050 - -
6 Sobic.007G142300 expressed protein -
7 Sobic.004G001200 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.004G291500 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.010G124200 expressed protein -
11 Sobic.009G154100 expressed protein -
12 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
13 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
14 Sobic.002G179700 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.010G143300 carboxyl-terminal peptidase, putative, expressed -
16 Sobic.010G202700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
17 Sobic.005G227000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic protease, putative, expressed -
18 Sobic.007G037700 expressed protein -
19 Sobic.005G188500 expressed protein -
20 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic005G196500 Sobic005G196500 Sobic006G001400 Sobic006G001400 Sobic005G196500--Sobic006G001400 Sobic006G233600 Sobic006G233600 Sobic005G196500--Sobic006G233600 Sobic005G209900 Sobic005G209900 Sobic005G196500--Sobic005G209900 Sobic010G107200 Sobic010G107200 Sobic005G196500--Sobic010G107200 Sobic005G227050 Sobic005G227050 Sobic005G196500--Sobic005G227050 Sobic007G142300 Sobic007G142300 Sobic005G196500--Sobic007G142300 Sobic004G001200 Sobic004G001200 Sobic005G196500--Sobic004G001200 Sobic003G333000 Sobic003G333000 Sobic005G196500--Sobic003G333000 Sobic004G291500 Sobic004G291500 Sobic005G196500--Sobic004G291500 Sobic006G001400--Sobic005G196500 Sobic006G001400--Sobic004G001200 Sobic009G059100 Sobic009G059100 Sobic006G001400--Sobic009G059100 Sobic005G020200 Sobic005G020200 Sobic006G001400--Sobic005G020200 Sobic010G124200 Sobic010G124200 Sobic006G001400--Sobic010G124200 Sobic003G157500 Sobic003G157500 Sobic006G001400--Sobic003G157500 Sobic006G001400--Sobic006G233600 Sobic006G172700 Sobic006G172700 Sobic006G001400--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic006G001400--Sobic005G056201 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic001G478100 Sobic001G478100 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G032800 Sobic006G032800 Sobic006G233600--Sobic006G032800 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic009G154100 Sobic009G154100 Sobic006G233600--Sobic009G154100 Sobic007G012800 Sobic007G012800 Sobic006G233600--Sobic007G012800 Sobic005G209900--Sobic010G107200 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G209900--Sobic005G227050 Sobic005G209900--Sobic006G233600 Sobic005G209900--Sobic007G012800 Sobic005G209900--Sobic007G142300 Sobic005G147800 Sobic005G147800 Sobic005G209900--Sobic005G147800 Sobic002G179700 Sobic002G179700 Sobic005G209900--Sobic002G179700 Sobic010G107200--Sobic005G209900 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic010G107200--Sobic007G142300 Sobic001G389600 Sobic001G389600 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic010G107200--Sobic005G147800 Sobic005G227050--Sobic005G209900 Sobic005G227050--Sobic005G196500 Sobic005G227050--Sobic009G154100 Sobic005G227050--Sobic002G179700 Sobic001G356400 Sobic001G356400 Sobic005G227050--Sobic001G356400 Sobic005G227050--Sobic010G107200 Sobic005G227050--Sobic006G001400 Sobic007G103800 Sobic007G103800 Sobic005G227050--Sobic007G103800 Sobic007G123200 Sobic007G123200 Sobic005G227050--Sobic007G123200 Sobic007G142300--Sobic005G147800 Sobic007G142300--Sobic010G107200 Sobic002G397400 Sobic002G397400 Sobic007G142300--Sobic002G397400 Sobic007G142300--Sobic005G209900 Sobic001G265900 Sobic001G265900 Sobic007G142300--Sobic001G265900 Sobic007G142300--Sobic005G196500 Sobic007G142300--Sobic006G233600 Sobic007G142300--Sobic010G124200 Sobic007G142300--Sobic006G032800 Sobic006G238000 Sobic006G238000 Sobic004G001200--Sobic006G238000 Sobic004G001200--Sobic006G001400 Sobic004G001200--Sobic009G059100 Sobic004G001200--Sobic004G291500 Sobic004G001200--Sobic005G020200 Sobic004G001200--Sobic006G172700 Sobic004G001200--Sobic005G196500 Sobic004G300800 Sobic004G300800 Sobic004G001200--Sobic004G300800 Sobic002G020100 Sobic002G020100 Sobic004G001200--Sobic002G020100 Sobic003G333000--Sobic010G107200 Sobic003G333000--Sobic005G196500 Sobic003G333000--Sobic009G154100 Sobic002G315000 Sobic002G315000 Sobic003G333000--Sobic002G315000 Sobic003G333000--Sobic005G209900 Sobic002G201100 Sobic002G201100 Sobic003G333000--Sobic002G201100 Sobic003G333000--Sobic006G001400 Sobic003G333000--Sobic001G478100 Sobic003G333000--Sobic005G227050 Sobic004G291500--Sobic004G001200 Sobic004G291500--Sobic005G196500 Sobic004G291500--Sobic006G001400 Sobic004G291500--Sobic006G233600 Sobic002G280500 Sobic002G280500 Sobic004G291500--Sobic002G280500 Sobic004G291500--Sobic009G059100 Sobic004G291500--Sobic006G172700 Sobic004G291500--Sobic006G238000 Sobic004G291500--Sobic001G478100
Octagon: transcription factors


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