Gene annotation
Transcriptome id Sobic.006G001400.2,Sobic.006G001400.1
Synonym Sb06g000310
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt C5YB83
Pfam -
Panther DB PTHR23155 PTHR23155:SF442
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12280 : LRR and NB-ARC domains-containing disease resistance protein
RAP-DB (Rice) LOC_Os04g08390.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G124130.1 , HORVU2Hr1G124130.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
2 Sobic.004G001200 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.009G059100 Cupin domain containing protein, expressed -
4 Sobic.005G020200 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.010G124200 expressed protein -
6 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
7 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
8 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.005G056201 - -
10 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.002G020100 chalcone synthase, putative, expressed -
12 Sobic.004G291500 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.005G209900 expressed protein -
14 Sobic.006G025700 - -
15 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -
16 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
17 Sobic.005G227050 - -
18 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.010G202700 AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
20 Sobic.004G300800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)


Gene co-expression network
sample Sobic006G001400 Sobic006G001400 Sobic005G196500 Sobic005G196500 Sobic006G001400--Sobic005G196500 Sobic004G001200 Sobic004G001200 Sobic006G001400--Sobic004G001200 Sobic009G059100 Sobic009G059100 Sobic006G001400--Sobic009G059100 Sobic005G020200 Sobic005G020200 Sobic006G001400--Sobic005G020200 Sobic010G124200 Sobic010G124200 Sobic006G001400--Sobic010G124200 Sobic003G157500 Sobic003G157500 Sobic006G001400--Sobic003G157500 Sobic006G233600 Sobic006G233600 Sobic006G001400--Sobic006G233600 Sobic006G172700 Sobic006G172700 Sobic006G001400--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic006G001400--Sobic005G056201 Sobic005G196500--Sobic006G001400 Sobic005G196500--Sobic006G233600 Sobic005G209900 Sobic005G209900 Sobic005G196500--Sobic005G209900 Sobic010G107200 Sobic010G107200 Sobic005G196500--Sobic010G107200 Sobic005G227050 Sobic005G227050 Sobic005G196500--Sobic005G227050 Sobic007G142300 Sobic007G142300 Sobic005G196500--Sobic007G142300 Sobic005G196500--Sobic004G001200 Sobic003G333000 Sobic003G333000 Sobic005G196500--Sobic003G333000 Sobic004G291500 Sobic004G291500 Sobic005G196500--Sobic004G291500 Sobic006G238000 Sobic006G238000 Sobic004G001200--Sobic006G238000 Sobic004G001200--Sobic006G001400 Sobic004G001200--Sobic009G059100 Sobic004G001200--Sobic004G291500 Sobic004G001200--Sobic005G020200 Sobic004G001200--Sobic006G172700 Sobic004G001200--Sobic005G196500 Sobic004G300800 Sobic004G300800 Sobic004G001200--Sobic004G300800 Sobic002G020100 Sobic002G020100 Sobic004G001200--Sobic002G020100 Sobic009G059100--Sobic006G172700 Sobic009G059100--Sobic003G157500 Sobic006G025700 Sobic006G025700 Sobic009G059100--Sobic006G025700 Sobic001G003600 Sobic001G003600 Sobic009G059100--Sobic001G003600 Sobic009G059100--Sobic002G020100 Sobic005G200600 Sobic005G200600 Sobic009G059100--Sobic005G200600 Sobic009G059100--Sobic005G056201 Sobic003G096100 Sobic003G096100 Sobic009G059100--Sobic003G096100 Sobic001G435600 Sobic001G435600 Sobic009G059100--Sobic001G435600 Sobic005G020200--Sobic003G157500 Sobic005G020200--Sobic009G059100 Sobic005G020200--Sobic005G200600 Sobic004G253800 Sobic004G253800 Sobic005G020200--Sobic004G253800 Sobic005G020200--Sobic006G001400 Sobic005G020200--Sobic005G056201 Sobic005G141000 Sobic005G141000 Sobic005G020200--Sobic005G141000 Sobic005G020200--Sobic006G025700 Sobic008G130700 Sobic008G130700 Sobic005G020200--Sobic008G130700 Sobic005G212400 Sobic005G212400 Sobic010G124200--Sobic005G212400 Sobic010G124200--Sobic006G172700 Sobic001G127700 Sobic001G127700 Sobic010G124200--Sobic001G127700 Sobic010G124200--Sobic006G001400 Sobic002G397400 Sobic002G397400 Sobic010G124200--Sobic002G397400 Sobic005G147800 Sobic005G147800 Sobic010G124200--Sobic005G147800 Sobic010G124200--Sobic009G059100 Sobic010G124200--Sobic002G020100 Sobic010G124200--Sobic007G142300 Sobic003G157500--Sobic006G025700 Sobic003G157500--Sobic009G059100 Sobic003G157500--Sobic005G020200 Sobic003G157500--Sobic004G253800 Sobic003G157500--Sobic002G020100 Sobic003G157500--Sobic005G056201 Sobic003G157500--Sobic001G003600 Sobic003G157500--Sobic005G200600 Sobic004G109000 Sobic004G109000 Sobic003G157500--Sobic004G109000 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic001G478100 Sobic001G478100 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G032800 Sobic006G032800 Sobic006G233600--Sobic006G032800 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic009G154100 Sobic009G154100 Sobic006G233600--Sobic009G154100 Sobic007G012800 Sobic007G012800 Sobic006G233600--Sobic007G012800 Sobic006G172700--Sobic001G003600 Sobic006G172700--Sobic009G059100 Sobic006G172700--Sobic002G020100 Sobic006G172700--Sobic001G127700 Sobic006G172700--Sobic005G056201 Sobic004G076000 Sobic004G076000 Sobic006G172700--Sobic004G076000 Sobic009G115050 Sobic009G115050 Sobic006G172700--Sobic009G115050 Sobic004G060700 Sobic004G060700 Sobic006G172700--Sobic004G060700 Sobic006G172700--Sobic003G096100 Sobic005G056201--Sobic006G172700 Sobic005G056201--Sobic002G020100 Sobic005G056201--Sobic001G003600 Sobic005G056201--Sobic009G059100 Sobic005G056201--Sobic004G076000 Sobic005G056201--Sobic003G157500 Sobic005G056201--Sobic003G096100 Sobic005G056201--Sobic005G020200 Sobic005G056201--Sobic006G025700
Octagon: transcription factors


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