Gene annotation
Transcriptome id Sobic.010G107200.1
Synonym G2, POP1, CUT1, CER6, KCS6
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt A0A194YID3
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF17
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G68530 : 3-ketoacyl-CoA synthase 6
RAP-DB (Rice) LOC_Os06g14810.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a046653 , Zm00025a036645 , Zm00025a042702 , Zm00025a029505 , Zm00025a044614 , Zm00025a022565 , Zm00025a044659 , Zm00025a028878 , Zm00025a032652 , Zm00025a036399 , Zm00025a001341 , Zm00025a021922 , Zm00025a050385 , Zm00025a028880
Brachypodium KQK20626 , KQK18680 , KQK18679 , PNT76138 , KQK01599 , KQK16807 , KQK08195
Barley HORVU6Hr1G073300.1 , HORVU3Hr1G054500.1 , HORVU1Hr1G086760.1 , HORVU3Hr1G054510.1 , HORVU7Hr1G042070.2 , HORVU7Hr1G042070.3 , HORVU7Hr1G042070.1 , HORVU4Hr1G072960.1 , HORVU5Hr1G087530.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU3Hr1G069880.1 , HORVU3Hr1G069880.2 , HORVU3Hr1G069880.3 , HORVU5Hr1G122360.1 , HORVU5Hr1G122360.2
Wheat TraesCS7B02G449000 , TraesCS6D02G071600 , TraesCS6A02G073300 , TraesCS3B02G313800 , TraesCS6B02G098300 , TraesCS4D02G148300 , TraesCS6A02G177700
Populus -


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cDNA sequences
Sobic.010G107200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G209900 expressed protein -
2 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
3 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
4 Sobic.009G154100 expressed protein -
5 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.007G142300 expressed protein -
7 Sobic.001G389600 expressed protein -
8 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
9 Sobic.005G147800 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -
12 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -
13 Sobic.005G188500 expressed protein -
14 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.001G265900 "similar to Proline-rich protein precursor, structural protein of cell walls in plants"(PubMedID : 24655390)@similar to Proline-rich protein precursor(PubMedID : 24655390)@POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
17 Sobic.005G227050 - -
18 Sobic.010G124200 expressed protein -
19 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
20 Sobic.010G165100 expressed protein -


Gene co-expression network
sample Sobic010G107200 Sobic010G107200 Sobic005G209900 Sobic005G209900 Sobic010G107200--Sobic005G209900 Sobic005G196500 Sobic005G196500 Sobic010G107200--Sobic005G196500 Sobic006G233600 Sobic006G233600 Sobic010G107200--Sobic006G233600 Sobic009G154100 Sobic009G154100 Sobic010G107200--Sobic009G154100 Sobic006G032800 Sobic006G032800 Sobic010G107200--Sobic006G032800 Sobic007G142300 Sobic007G142300 Sobic010G107200--Sobic007G142300 Sobic001G389600 Sobic001G389600 Sobic010G107200--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic010G107200--Sobic001G478100 Sobic005G147800 Sobic005G147800 Sobic010G107200--Sobic005G147800 Sobic005G209900--Sobic010G107200 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G227050 Sobic005G227050 Sobic005G209900--Sobic005G227050 Sobic005G209900--Sobic006G233600 Sobic007G012800 Sobic007G012800 Sobic005G209900--Sobic007G012800 Sobic005G209900--Sobic007G142300 Sobic005G209900--Sobic005G147800 Sobic002G179700 Sobic002G179700 Sobic005G209900--Sobic002G179700 Sobic006G001400 Sobic006G001400 Sobic005G196500--Sobic006G001400 Sobic005G196500--Sobic006G233600 Sobic005G196500--Sobic005G209900 Sobic005G196500--Sobic010G107200 Sobic005G196500--Sobic005G227050 Sobic005G196500--Sobic007G142300 Sobic004G001200 Sobic004G001200 Sobic005G196500--Sobic004G001200 Sobic003G333000 Sobic003G333000 Sobic005G196500--Sobic003G333000 Sobic004G291500 Sobic004G291500 Sobic005G196500--Sobic004G291500 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic006G233600--Sobic009G154100 Sobic006G233600--Sobic007G012800 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic007G189400 Sobic007G189400 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic009G154100--Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic005G188500 Sobic005G188500 Sobic006G032800--Sobic005G188500 Sobic006G032800--Sobic006G233600 Sobic003G018700 Sobic003G018700 Sobic006G032800--Sobic003G018700 Sobic006G032800--Sobic009G154100 Sobic006G032800--Sobic001G389600 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic007G142300--Sobic005G147800 Sobic007G142300--Sobic010G107200 Sobic002G397400 Sobic002G397400 Sobic007G142300--Sobic002G397400 Sobic007G142300--Sobic005G209900 Sobic001G265900 Sobic001G265900 Sobic007G142300--Sobic001G265900 Sobic007G142300--Sobic005G196500 Sobic007G142300--Sobic006G233600 Sobic010G124200 Sobic010G124200 Sobic007G142300--Sobic010G124200 Sobic007G142300--Sobic006G032800 Sobic002G403000 Sobic002G403000 Sobic001G389600--Sobic002G403000 Sobic010G165100 Sobic010G165100 Sobic001G389600--Sobic010G165100 Sobic001G389600--Sobic001G478100 Sobic002G045200 Sobic002G045200 Sobic001G389600--Sobic002G045200 Sobic001G389600--Sobic010G107200 Sobic002G142500 Sobic002G142500 Sobic001G389600--Sobic002G142500 Sobic002G246000 Sobic002G246000 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic001G389600--Sobic006G032800 Sobic001G478100--Sobic001G389600 Sobic001G478100--Sobic006G233600 Sobic001G478100--Sobic010G107200 Sobic001G478100--Sobic002G403000 Sobic010G143300 Sobic010G143300 Sobic001G478100--Sobic010G143300 Sobic001G478100--Sobic006G032800 Sobic001G478100--Sobic005G196500 Sobic001G478100--Sobic007G142300 Sobic001G478100--Sobic010G165100 Sobic005G147800--Sobic007G142300 Sobic005G147800--Sobic001G265900 Sobic005G147800--Sobic002G397400 Sobic005G147800--Sobic010G107200 Sobic005G147800--Sobic010G124200 Sobic005G147800--Sobic005G209900 Sobic010G096200 Sobic010G096200 Sobic005G147800--Sobic010G096200 Sobic005G212400 Sobic005G212400 Sobic005G147800--Sobic005G212400 Sobic001G127700 Sobic001G127700 Sobic005G147800--Sobic001G127700
Octagon: transcription factors


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