Gene annotation
Transcriptome id Sobic.007G012800.1
Synonym Sb07g001185
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1B6PEW0
Pfam -
Panther DB PTHR23155 PTHR23155:SF498
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19050 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os08g39570.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT61095 , KQK02373 , PNT69827 , PNT69842 , PNT69841
Barley HORVU3Hr1G001340.7 , HORVU3Hr1G001340.6
Wheat TraesCS3D02G002400 , TraesCSU02G041700 , TraesCSU02G167500 , TraesCSU02G167500 , TraesCS3D02G002500 , TraesCSU02G042000 , TraesCSU02G042200 , TraesCSU02G187300 , TraesCSU02G207600 , TraesCS3A02G008300 , TraesCS7B02G421500 , TraesCS3A02G008200 , TraesCS3D02G002400 , TraesCSU02G167600 , TraesCSU02G212300 , TraesCSU02G041300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G209900 expressed protein -
2 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
3 Sobic.009G154100 expressed protein -
4 Sobic.009G134000 receptor-like protein kinase precursor, putative, expressed -
5 Sobic.005G188500 expressed protein -
6 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.007G103800 Leucine Rich Repeat family protein, expressed -
8 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
9 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
10 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
12 Sobic.004G340000 expressed protein -
13 Sobic.005G227050 - -
14 Sobic.010G116100 expressed protein -
15 Sobic.007G189400 BEE 1, putative, expressed -
16 Sobic.003G116100 pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.003G419600 disease resistance protein RGA2, putative, expressed -
18 Sobic.008G035400 stress responsive A/B Barrel domain containing protein, expressed -
19 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
20 Sobic.001G389600 expressed protein -


Gene co-expression network
sample Sobic007G012800 Sobic007G012800 Sobic005G209900 Sobic005G209900 Sobic007G012800--Sobic005G209900 Sobic001G488400 Sobic001G488400 Sobic007G012800--Sobic001G488400 Sobic009G154100 Sobic009G154100 Sobic007G012800--Sobic009G154100 Sobic009G134000 Sobic009G134000 Sobic007G012800--Sobic009G134000 Sobic005G188500 Sobic005G188500 Sobic007G012800--Sobic005G188500 Sobic010G107200 Sobic010G107200 Sobic007G012800--Sobic010G107200 Sobic007G103800 Sobic007G103800 Sobic007G012800--Sobic007G103800 Sobic006G032800 Sobic006G032800 Sobic007G012800--Sobic006G032800 Sobic003G277200 Sobic003G277200 Sobic007G012800--Sobic003G277200 Sobic005G209900--Sobic010G107200 Sobic005G196500 Sobic005G196500 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G227050 Sobic005G227050 Sobic005G209900--Sobic005G227050 Sobic006G233600 Sobic006G233600 Sobic005G209900--Sobic006G233600 Sobic005G209900--Sobic007G012800 Sobic007G142300 Sobic007G142300 Sobic005G209900--Sobic007G142300 Sobic005G147800 Sobic005G147800 Sobic005G209900--Sobic005G147800 Sobic002G179700 Sobic002G179700 Sobic005G209900--Sobic002G179700 Sobic001G488400--Sobic005G188500 Sobic010G027700 Sobic010G027700 Sobic001G488400--Sobic010G027700 Sobic006G044200 Sobic006G044200 Sobic001G488400--Sobic006G044200 Sobic008G187400 Sobic008G187400 Sobic001G488400--Sobic008G187400 Sobic001G438500 Sobic001G438500 Sobic001G488400--Sobic001G438500 Sobic003G116100 Sobic003G116100 Sobic001G488400--Sobic003G116100 Sobic007G189400 Sobic007G189400 Sobic001G488400--Sobic007G189400 Sobic002G068400 Sobic002G068400 Sobic001G488400--Sobic002G068400 Sobic008G035400 Sobic008G035400 Sobic001G488400--Sobic008G035400 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic009G154100--Sobic006G032800 Sobic009G134000--Sobic007G012800 Sobic010G143300 Sobic010G143300 Sobic009G134000--Sobic010G143300 Sobic009G134000--Sobic009G154100 Sobic009G134000--Sobic003G277200 Sobic006G178800 Sobic006G178800 Sobic009G134000--Sobic006G178800 Sobic009G134000--Sobic010G107200 Sobic001G389600 Sobic001G389600 Sobic009G134000--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic009G134000--Sobic001G478100 Sobic005G130700 Sobic005G130700 Sobic009G134000--Sobic005G130700 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic005G188500--Sobic006G032800 Sobic005G188500--Sobic007G012800 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G188500--Sobic005G209900 Sobic005G188500--Sobic010G107200 Sobic010G107200--Sobic005G209900 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic010G107200--Sobic007G142300 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic010G107200--Sobic005G147800 Sobic007G103800--Sobic007G012800 Sobic007G103800--Sobic005G227050 Sobic007G103800--Sobic009G134000 Sobic007G103800--Sobic002G179700 Sobic007G103800--Sobic009G154100 Sobic007G103800--Sobic005G130700 Sobic007G103800--Sobic005G196500 Sobic003G420800 Sobic003G420800 Sobic007G103800--Sobic003G420800 Sobic007G103800--Sobic005G209900 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic006G032800--Sobic005G188500 Sobic006G032800--Sobic006G233600 Sobic003G018700 Sobic003G018700 Sobic006G032800--Sobic003G018700 Sobic006G032800--Sobic009G154100 Sobic006G032800--Sobic001G389600 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic002G419200 Sobic002G419200 Sobic003G277200--Sobic002G419200 Sobic003G338200 Sobic003G338200 Sobic003G277200--Sobic003G338200 Sobic003G277200--Sobic003G116100 Sobic008G039800 Sobic008G039800 Sobic003G277200--Sobic008G039800 Sobic010G216600 Sobic010G216600 Sobic003G277200--Sobic010G216600 Sobic001G345200 Sobic001G345200 Sobic003G277200--Sobic001G345200 Sobic001G285200 Sobic001G285200 Sobic003G277200--Sobic001G285200 Sobic003G277200--Sobic007G012800 Sobic001G037400 Sobic001G037400 Sobic003G277200--Sobic001G037400
Octagon: transcription factors


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