Hb_142898_010

Information

Type -
Description -
Location Contig142898: 334-1079
Sequence    

Annotation

kegg
ID rcu:RCOM_0339580
description hypothetical protein
nr
ID XP_002533644.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C778
description Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1
trembl
ID B9T5X5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0339580 PE=4 SV=1
Gene Ontology
ID GO:0033588
description elongator complex protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11344: 622-1137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142898_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002307_030 0.0832605857 - - 40S ribosomal protein S15D [Hevea brasiliensis]
3 Hb_021650_030 0.0835312238 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
4 Hb_002078_450 0.0866948218 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_001881_020 0.0889677563 - - clathrin binding protein, putative [Ricinus communis]
6 Hb_005686_110 0.0929433199 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
7 Hb_001243_050 0.0965945567 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
8 Hb_000156_130 0.0975295833 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
9 Hb_000815_260 0.1000804638 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
10 Hb_000091_090 0.1001734656 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
11 Hb_001718_100 0.1004643439 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_000371_080 0.1022619643 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
13 Hb_001048_020 0.1029102676 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
14 Hb_007672_010 0.103353616 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
15 Hb_020178_070 0.1038360424 - - Protein Z, putative [Ricinus communis]
16 Hb_023732_070 0.1051318773 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_000086_570 0.1061056432 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
18 Hb_071736_020 0.1082894134 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_000671_150 0.1086288318 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_000877_060 0.1093790812 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]

Gene co-expression network

sample Hb_142898_010 Hb_142898_010 Hb_002307_030 Hb_002307_030 Hb_142898_010--Hb_002307_030 Hb_021650_030 Hb_021650_030 Hb_142898_010--Hb_021650_030 Hb_002078_450 Hb_002078_450 Hb_142898_010--Hb_002078_450 Hb_001881_020 Hb_001881_020 Hb_142898_010--Hb_001881_020 Hb_005686_110 Hb_005686_110 Hb_142898_010--Hb_005686_110 Hb_001243_050 Hb_001243_050 Hb_142898_010--Hb_001243_050 Hb_002307_030--Hb_001243_050 Hb_002374_490 Hb_002374_490 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_002411_200 Hb_002411_200 Hb_021650_030--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_021650_030--Hb_000086_570 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_021650_030--Hb_001881_020 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_002078_450--Hb_005686_110 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_001881_020--Hb_000091_090 Hb_020178_070 Hb_020178_070 Hb_001881_020--Hb_020178_070 Hb_001881_020--Hb_002411_200 Hb_001881_020--Hb_000086_570 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_005686_110--Hb_022250_040 Hb_001235_070 Hb_001235_070 Hb_005686_110--Hb_001235_070 Hb_001369_050 Hb_001369_050 Hb_005686_110--Hb_001369_050 Hb_005686_110--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_001243_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_001243_050--Hb_002603_100 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001671_020 Hb_001671_020 Hb_001243_050--Hb_001671_020 Hb_001243_050--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3439 7.58711 3.53411 4.1721 9.33487 21.2256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8281 22.1605 17.1606 7.83129 0.966399

CAGE analysis