Hb_044387_010

Information

Type -
Description -
Location Contig44387: 54-946
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044387_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_007426_160 0.2254995595 - - -
3 Hb_000160_300 0.2335665777 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
4 Hb_000302_180 0.2394717396 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000270_260 0.2435390259 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
6 Hb_022181_020 0.2510514817 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
7 Hb_001898_160 0.2513112397 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
8 Hb_001141_380 0.252083867 - - hypothetical protein PRUPE_ppa012823mg [Prunus persica]
9 Hb_002603_080 0.2520900648 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
10 Hb_000208_120 0.2523546594 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
11 Hb_001105_190 0.2624610755 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
12 Hb_000100_100 0.2627568745 - - hypothetical protein VITISV_027675 [Vitis vinifera]
13 Hb_000630_070 0.2629548962 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
14 Hb_137222_020 0.2636012792 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
15 Hb_001771_140 0.2641240242 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
16 Hb_002221_040 0.2645066052 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
17 Hb_000365_070 0.2648688995 - - PREDICTED: SWR1 complex subunit 2 [Jatropha curcas]
18 Hb_003058_040 0.2650524869 - - rotamase, putative [Ricinus communis]
19 Hb_001902_080 0.2655387534 - - conserved hypothetical protein [Ricinus communis]
20 Hb_035273_030 0.2655433699 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_044387_010 Hb_044387_010 Hb_007426_160 Hb_007426_160 Hb_044387_010--Hb_007426_160 Hb_000160_300 Hb_000160_300 Hb_044387_010--Hb_000160_300 Hb_000302_180 Hb_000302_180 Hb_044387_010--Hb_000302_180 Hb_000270_260 Hb_000270_260 Hb_044387_010--Hb_000270_260 Hb_022181_020 Hb_022181_020 Hb_044387_010--Hb_022181_020 Hb_001898_160 Hb_001898_160 Hb_044387_010--Hb_001898_160 Hb_000012_460 Hb_000012_460 Hb_007426_160--Hb_000012_460 Hb_001439_060 Hb_001439_060 Hb_007426_160--Hb_001439_060 Hb_000932_100 Hb_000932_100 Hb_007426_160--Hb_000932_100 Hb_000160_320 Hb_000160_320 Hb_007426_160--Hb_000160_320 Hb_000630_040 Hb_000630_040 Hb_007426_160--Hb_000630_040 Hb_150379_010 Hb_150379_010 Hb_007426_160--Hb_150379_010 Hb_003683_120 Hb_003683_120 Hb_000160_300--Hb_003683_120 Hb_082609_010 Hb_082609_010 Hb_000160_300--Hb_082609_010 Hb_001268_420 Hb_001268_420 Hb_000160_300--Hb_001268_420 Hb_001427_200 Hb_001427_200 Hb_000160_300--Hb_001427_200 Hb_028486_030 Hb_028486_030 Hb_000160_300--Hb_028486_030 Hb_000160_300--Hb_001898_160 Hb_000819_080 Hb_000819_080 Hb_000302_180--Hb_000819_080 Hb_000302_180--Hb_000270_260 Hb_003939_050 Hb_003939_050 Hb_000302_180--Hb_003939_050 Hb_022693_140 Hb_022693_140 Hb_000302_180--Hb_022693_140 Hb_000329_320 Hb_000329_320 Hb_000302_180--Hb_000329_320 Hb_000815_070 Hb_000815_070 Hb_000302_180--Hb_000815_070 Hb_000270_260--Hb_082609_010 Hb_012022_150 Hb_012022_150 Hb_000270_260--Hb_012022_150 Hb_000270_260--Hb_000329_320 Hb_111985_050 Hb_111985_050 Hb_000270_260--Hb_111985_050 Hb_001322_140 Hb_001322_140 Hb_000270_260--Hb_001322_140 Hb_035273_030 Hb_035273_030 Hb_022181_020--Hb_035273_030 Hb_002374_100 Hb_002374_100 Hb_022181_020--Hb_002374_100 Hb_000069_600 Hb_000069_600 Hb_022181_020--Hb_000069_600 Hb_000445_420 Hb_000445_420 Hb_022181_020--Hb_000445_420 Hb_000111_360 Hb_000111_360 Hb_022181_020--Hb_000111_360 Hb_002769_050 Hb_002769_050 Hb_022181_020--Hb_002769_050 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17891 0 0.0821016 0 0.0356311 0.124922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163764 0.0643696 0.114744 0.104801 0.127172

CAGE analysis