Hb_000160_300

Information

Type -
Description -
Location Contig160: 264265-273478
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08720g
description POPTRDRAFT_714140; hypothetical protein
nr
ID XP_002305206.2
description hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H391
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08720g PE=4 SV=2
Gene Ontology
ID GO:0044444
description protease do-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14340: 269881-270608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_300 0.0 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
2 Hb_003683_120 0.1106872217 - - conserved hypothetical protein [Ricinus communis]
3 Hb_082609_010 0.1150248903 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
4 Hb_001268_420 0.1169984597 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
5 Hb_001427_200 0.1178308064 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
6 Hb_028486_030 0.1187419377 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
7 Hb_001898_160 0.1200963341 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
8 Hb_027654_060 0.120390026 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
9 Hb_001292_020 0.1224821325 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
10 Hb_011909_100 0.128731588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_026549_040 0.1296567973 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
12 Hb_000270_260 0.1316958088 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
13 Hb_001491_010 0.1322866352 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
14 Hb_005539_360 0.1333185386 - - kinesin light chain, putative [Ricinus communis]
15 Hb_004048_110 0.1353077334 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
16 Hb_000483_410 0.1381835591 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
17 Hb_012675_050 0.1413333739 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000614_220 0.1420107652 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
19 Hb_002221_040 0.1420212107 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
20 Hb_002205_070 0.1421192256 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000160_300 Hb_000160_300 Hb_003683_120 Hb_003683_120 Hb_000160_300--Hb_003683_120 Hb_082609_010 Hb_082609_010 Hb_000160_300--Hb_082609_010 Hb_001268_420 Hb_001268_420 Hb_000160_300--Hb_001268_420 Hb_001427_200 Hb_001427_200 Hb_000160_300--Hb_001427_200 Hb_028486_030 Hb_028486_030 Hb_000160_300--Hb_028486_030 Hb_001898_160 Hb_001898_160 Hb_000160_300--Hb_001898_160 Hb_003683_120--Hb_001427_200 Hb_026549_040 Hb_026549_040 Hb_003683_120--Hb_026549_040 Hb_004934_110 Hb_004934_110 Hb_003683_120--Hb_004934_110 Hb_001292_020 Hb_001292_020 Hb_003683_120--Hb_001292_020 Hb_001246_060 Hb_001246_060 Hb_003683_120--Hb_001246_060 Hb_003683_120--Hb_028486_030 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_000352_270 Hb_000352_270 Hb_082609_010--Hb_000352_270 Hb_000614_220 Hb_000614_220 Hb_082609_010--Hb_000614_220 Hb_003020_220 Hb_003020_220 Hb_082609_010--Hb_003020_220 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_001604_060 Hb_001604_060 Hb_001268_420--Hb_001604_060 Hb_001268_420--Hb_001427_200 Hb_032264_070 Hb_032264_070 Hb_001268_420--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001268_420--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001268_420--Hb_001105_030 Hb_028872_080 Hb_028872_080 Hb_001268_420--Hb_028872_080 Hb_001427_200--Hb_032264_070 Hb_001427_200--Hb_004195_270 Hb_001427_200--Hb_001105_030 Hb_012675_050 Hb_012675_050 Hb_001427_200--Hb_012675_050 Hb_000680_140 Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_004846_090 Hb_004846_090 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_028486_030--Hb_026549_040 Hb_028486_030--Hb_012675_050 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22581 0.965952 3.08903 0.678639 2.48046 3.60675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17614 7.87205 5.21475 2.35794 6.07051

CAGE analysis