Hb_031421_020

Information

Type -
Description -
Location Contig31421: 9190-11967
Sequence    

Annotation

kegg
ID rcu:RCOM_1682170
description ADP-ribose pyrophosphatase, putative
nr
ID XP_002509654.1
description ADP-ribose pyrophosphatase, putative [Ricinus communis]
swissprot
ID Q9SZ63
description Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2
trembl
ID B9RBX0
description ADP-ribose pyrophosphatase, putative OS=Ricinus communis GN=RCOM_1682170 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33222: 9403-9998 , PASA_asmbl_33223: 10560-10738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031421_020 0.0 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
2 Hb_003106_060 0.083784204 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
3 Hb_000696_340 0.099900696 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
4 Hb_000227_120 0.1026751383 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005329_020 0.1079129214 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
6 Hb_003050_220 0.1111101223 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
7 Hb_000329_630 0.1116276557 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
8 Hb_001545_080 0.1137273388 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
9 Hb_003226_180 0.1154582428 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
10 Hb_007441_200 0.1198889658 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
11 Hb_000069_600 0.1206203619 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_000977_110 0.1226745671 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
13 Hb_003142_020 0.1232553376 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
14 Hb_000976_300 0.1244405149 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
15 Hb_001007_060 0.1250629596 - - Transcriptional corepressor SEUSS [Glycine soja]
16 Hb_011671_180 0.1253328862 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
17 Hb_001021_130 0.1263667047 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
18 Hb_000329_650 0.1269864461 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
19 Hb_003376_400 0.1270908431 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
20 Hb_000329_470 0.1273701145 - - ccr4-not transcription complex, putative [Ricinus communis]

Gene co-expression network

sample Hb_031421_020 Hb_031421_020 Hb_003106_060 Hb_003106_060 Hb_031421_020--Hb_003106_060 Hb_000696_340 Hb_000696_340 Hb_031421_020--Hb_000696_340 Hb_000227_120 Hb_000227_120 Hb_031421_020--Hb_000227_120 Hb_005329_020 Hb_005329_020 Hb_031421_020--Hb_005329_020 Hb_003050_220 Hb_003050_220 Hb_031421_020--Hb_003050_220 Hb_000329_630 Hb_000329_630 Hb_031421_020--Hb_000329_630 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_003106_060--Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_003106_060--Hb_003142_020 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_000696_340--Hb_005329_020 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_000227_120--Hb_003142_020 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_005329_020--Hb_000329_630 Hb_000571_120 Hb_000571_120 Hb_005329_020--Hb_000571_120 Hb_000395_080 Hb_000395_080 Hb_005329_020--Hb_000395_080 Hb_005056_060 Hb_005056_060 Hb_005329_020--Hb_005056_060 Hb_000877_060 Hb_000877_060 Hb_005329_020--Hb_000877_060 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_005054_290 Hb_005054_290 Hb_000329_630--Hb_005054_290 Hb_001439_100 Hb_001439_100 Hb_000329_630--Hb_001439_100 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000000_460 Hb_000000_460 Hb_000329_630--Hb_000000_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.383 9.5359 3.13334 3.62553 8.13167 10.7111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6897 9.89413 14.0022 13.609 10.571

CAGE analysis