Hb_023936_010

Information

Type -
Description -
Location Contig23936: 5795-7738
Sequence    

Annotation

kegg
ID rcu:RCOM_0291130
description hypothetical protein
nr
ID XP_002533031.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T462
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0291130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25088: 7359-8082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023936_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000085_350 0.1501941002 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
3 Hb_000011_570 0.1510679749 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
4 Hb_001096_090 0.1514477982 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
5 Hb_001377_450 0.1584264777 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_000185_050 0.1643787469 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
7 Hb_001073_080 0.1646144608 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
8 Hb_015299_030 0.1648343226 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
9 Hb_002811_170 0.1677310886 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_000163_050 0.1677953936 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
11 Hb_007747_050 0.1697277321 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
12 Hb_006384_010 0.1708580496 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000946_090 0.1724484951 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
14 Hb_000035_270 0.1746095176 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
15 Hb_021079_010 0.1759178694 - - PREDICTED: histone H2B-like [Populus euphratica]
16 Hb_004357_050 0.1761388608 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
17 Hb_001221_570 0.1764798706 - - -
18 Hb_000155_160 0.1767892958 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
19 Hb_005460_060 0.1769016917 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
20 Hb_000215_090 0.1775718686 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_023936_010 Hb_023936_010 Hb_000085_350 Hb_000085_350 Hb_023936_010--Hb_000085_350 Hb_000011_570 Hb_000011_570 Hb_023936_010--Hb_000011_570 Hb_001096_090 Hb_001096_090 Hb_023936_010--Hb_001096_090 Hb_001377_450 Hb_001377_450 Hb_023936_010--Hb_001377_450 Hb_000185_050 Hb_000185_050 Hb_023936_010--Hb_000185_050 Hb_001073_080 Hb_001073_080 Hb_023936_010--Hb_001073_080 Hb_007747_050 Hb_007747_050 Hb_000085_350--Hb_007747_050 Hb_000538_120 Hb_000538_120 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_002811_170 Hb_002811_170 Hb_000085_350--Hb_002811_170 Hb_000676_140 Hb_000676_140 Hb_000011_570--Hb_000676_140 Hb_000866_240 Hb_000866_240 Hb_000011_570--Hb_000866_240 Hb_001016_150 Hb_001016_150 Hb_000011_570--Hb_001016_150 Hb_004709_010 Hb_004709_010 Hb_000011_570--Hb_004709_010 Hb_000011_570--Hb_000185_050 Hb_014720_040 Hb_014720_040 Hb_000011_570--Hb_014720_040 Hb_001096_090--Hb_000085_350 Hb_001096_090--Hb_000302_140 Hb_002228_070 Hb_002228_070 Hb_001096_090--Hb_002228_070 Hb_131181_010 Hb_131181_010 Hb_001096_090--Hb_131181_010 Hb_001096_090--Hb_001016_150 Hb_001096_090--Hb_000538_120 Hb_000429_040 Hb_000429_040 Hb_001377_450--Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_001377_450--Hb_001073_080 Hb_001472_100 Hb_001472_100 Hb_000185_050--Hb_001472_100 Hb_002946_190 Hb_002946_190 Hb_000185_050--Hb_002946_190 Hb_000731_160 Hb_000731_160 Hb_000185_050--Hb_000731_160 Hb_111036_010 Hb_111036_010 Hb_000185_050--Hb_111036_010 Hb_000690_190 Hb_000690_190 Hb_000185_050--Hb_000690_190 Hb_003942_020 Hb_003942_020 Hb_000185_050--Hb_003942_020 Hb_007894_050 Hb_007894_050 Hb_001073_080--Hb_007894_050 Hb_000390_090 Hb_000390_090 Hb_001073_080--Hb_000390_090 Hb_001301_340 Hb_001301_340 Hb_001073_080--Hb_001301_340 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_001073_080--Hb_000429_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166959 0.168836 1.56076 0.855223 0.276688 0.597439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.986493 2.1337 0.28603 1.12269 0.556403

CAGE analysis