Hb_020831_050

Information

Type -
Description -
Location Contig20831: 33941-34969
Sequence    

Annotation

kegg
ID tcc:TCM_030492
description hypothetical protein
nr
ID XP_007026453.1
description Uncharacterized protein TCM_030492 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GGS7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_030492 PE=4 SV=1
Gene Ontology
ID GO:0044237
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020831_050 0.0 - - Uncharacterized protein TCM_030492 [Theobroma cacao]
2 Hb_000918_050 0.3398065593 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_078780_010 0.3430460117 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_030627_050 0.3709433955 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
5 Hb_009393_070 0.373274987 - - PREDICTED: uncharacterized protein At2g29880-like [Populus euphratica]
6 Hb_012404_010 0.388570406 - - -
7 Hb_005511_090 0.3940629702 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
8 Hb_031691_010 0.3948964456 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_027890_010 0.3964111812 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
10 Hb_012305_110 0.3970240411 - - PREDICTED: uncharacterized protein LOC105156417 [Sesamum indicum]
11 Hb_000031_350 0.398271151 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
12 Hb_003124_260 0.4017423441 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
13 Hb_010521_030 0.4045626358 - - -
14 Hb_000608_200 0.4116839679 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Pyrus x bretschneideri]
15 Hb_186440_010 0.4119424274 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_003626_080 0.415009396 - - conserved hypothetical protein [Ricinus communis]
17 Hb_020763_010 0.4200749249 - - polyamine oxidase, putative [Ricinus communis]
18 Hb_003038_150 0.4212443229 - - -
19 Hb_172388_010 0.4265389407 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
20 Hb_077935_010 0.4269940502 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_020831_050 Hb_020831_050 Hb_000918_050 Hb_000918_050 Hb_020831_050--Hb_000918_050 Hb_078780_010 Hb_078780_010 Hb_020831_050--Hb_078780_010 Hb_030627_050 Hb_030627_050 Hb_020831_050--Hb_030627_050 Hb_009393_070 Hb_009393_070 Hb_020831_050--Hb_009393_070 Hb_012404_010 Hb_012404_010 Hb_020831_050--Hb_012404_010 Hb_005511_090 Hb_005511_090 Hb_020831_050--Hb_005511_090 Hb_068031_010 Hb_068031_010 Hb_000918_050--Hb_068031_010 Hb_000918_050--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_000918_050--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_000918_050--Hb_027890_010 Hb_186440_010 Hb_186440_010 Hb_000918_050--Hb_186440_010 Hb_000918_050--Hb_030627_050 Hb_078780_010--Hb_009393_070 Hb_022132_020 Hb_022132_020 Hb_078780_010--Hb_022132_020 Hb_141425_010 Hb_141425_010 Hb_078780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_078780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_078780_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_078780_010--Hb_009268_030 Hb_030627_050--Hb_012404_010 Hb_030627_050--Hb_031691_010 Hb_030627_050--Hb_027890_010 Hb_030627_050--Hb_186440_010 Hb_008758_010 Hb_008758_010 Hb_030627_050--Hb_008758_010 Hb_009393_070--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_009393_070--Hb_170973_010 Hb_009393_070--Hb_141425_010 Hb_009393_070--Hb_000987_110 Hb_009393_070--Hb_123396_010 Hb_012404_010--Hb_031691_010 Hb_012404_010--Hb_027890_010 Hb_012404_010--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_012404_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_012404_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_012404_010--Hb_009188_010 Hb_012753_010 Hb_012753_010 Hb_005511_090--Hb_012753_010 Hb_000608_200 Hb_000608_200 Hb_005511_090--Hb_000608_200 Hb_015978_050 Hb_015978_050 Hb_005511_090--Hb_015978_050 Hb_000054_110 Hb_000054_110 Hb_005511_090--Hb_000054_110 Hb_005731_150 Hb_005731_150 Hb_005511_090--Hb_005731_150 Hb_000236_450 Hb_000236_450 Hb_005511_090--Hb_000236_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0298302 0.265373 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.102466 0.0230878 0.227319

CAGE analysis