Hb_000918_050

Information

Type -
Description -
Location Contig918: 106512-111211
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000918_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_068031_010 0.2072170896 - - hypothetical protein VITISV_034229 [Vitis vinifera]
3 Hb_012404_010 0.2332246547 - - -
4 Hb_031691_010 0.2380236323 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_027890_010 0.2392770263 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_186440_010 0.2537166114 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_030627_050 0.2837060962 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
8 Hb_097889_010 0.2959100479 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
9 Hb_011537_090 0.2970820959 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
10 Hb_009188_010 0.2993250421 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_008976_010 0.3002415615 - - -
12 Hb_000710_120 0.3004955683 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
13 Hb_001309_030 0.300662074 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004019_100 0.3007512202 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
15 Hb_001972_020 0.3012351871 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001817_190 0.3013433227 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_010783_010 0.3014137173 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_124540_020 0.304786343 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_090778_010 0.3055414595 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
20 Hb_011616_060 0.3056890986 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]

Gene co-expression network

sample Hb_000918_050 Hb_000918_050 Hb_068031_010 Hb_068031_010 Hb_000918_050--Hb_068031_010 Hb_012404_010 Hb_012404_010 Hb_000918_050--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_000918_050--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_000918_050--Hb_027890_010 Hb_186440_010 Hb_186440_010 Hb_000918_050--Hb_186440_010 Hb_030627_050 Hb_030627_050 Hb_000918_050--Hb_030627_050 Hb_026532_010 Hb_026532_010 Hb_068031_010--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_068031_010--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_068031_010--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_068031_010--Hb_090778_010 Hb_124540_020 Hb_124540_020 Hb_068031_010--Hb_124540_020 Hb_010783_010 Hb_010783_010 Hb_068031_010--Hb_010783_010 Hb_012404_010--Hb_031691_010 Hb_012404_010--Hb_027890_010 Hb_012404_010--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_012404_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_012404_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_012404_010--Hb_009188_010 Hb_031691_010--Hb_027890_010 Hb_031691_010--Hb_186440_010 Hb_031691_010--Hb_097889_010 Hb_031691_010--Hb_011537_090 Hb_031691_010--Hb_009188_010 Hb_027890_010--Hb_186440_010 Hb_027890_010--Hb_097889_010 Hb_027890_010--Hb_011537_090 Hb_027890_010--Hb_009188_010 Hb_186440_010--Hb_097889_010 Hb_186440_010--Hb_011537_090 Hb_186440_010--Hb_009188_010 Hb_030627_050--Hb_012404_010 Hb_030627_050--Hb_031691_010 Hb_030627_050--Hb_027890_010 Hb_030627_050--Hb_186440_010 Hb_008758_010 Hb_008758_010 Hb_030627_050--Hb_008758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00353015 0.0137859 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0183371

CAGE analysis