Hb_030627_050

Information

Type -
Description -
Location Contig30627: 69525-69956
Sequence    

Annotation

kegg
ID tcc:TCM_041937
description hypothetical protein
nr
ID XP_007016573.1
description Uncharacterized protein TCM_041937 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GYC9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041937 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030627_050 0.0 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
2 Hb_012404_010 0.2309230106 - - -
3 Hb_031691_010 0.2487548493 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_027890_010 0.252780002 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
5 Hb_000918_050 0.2837060962 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_186440_010 0.290176456 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_008758_010 0.3111784462 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_005344_010 0.3457695882 - - PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
9 Hb_097889_010 0.3657747926 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
10 Hb_011537_090 0.3675638987 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
11 Hb_004195_260 0.3703169255 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
12 Hb_020831_050 0.3709433955 - - Uncharacterized protein TCM_030492 [Theobroma cacao]
13 Hb_009188_010 0.3709586534 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_008976_010 0.3723352007 - - -
15 Hb_000710_120 0.3727156374 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
16 Hb_001309_030 0.372964772 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004019_100 0.3730980769 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
18 Hb_001972_020 0.3738208037 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001817_190 0.3739820634 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_010783_010 0.3740869971 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_030627_050 Hb_030627_050 Hb_012404_010 Hb_012404_010 Hb_030627_050--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_030627_050--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_030627_050--Hb_027890_010 Hb_000918_050 Hb_000918_050 Hb_030627_050--Hb_000918_050 Hb_186440_010 Hb_186440_010 Hb_030627_050--Hb_186440_010 Hb_008758_010 Hb_008758_010 Hb_030627_050--Hb_008758_010 Hb_012404_010--Hb_031691_010 Hb_012404_010--Hb_027890_010 Hb_012404_010--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_012404_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_012404_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_012404_010--Hb_009188_010 Hb_031691_010--Hb_027890_010 Hb_031691_010--Hb_186440_010 Hb_031691_010--Hb_097889_010 Hb_031691_010--Hb_011537_090 Hb_031691_010--Hb_009188_010 Hb_027890_010--Hb_186440_010 Hb_027890_010--Hb_097889_010 Hb_027890_010--Hb_011537_090 Hb_027890_010--Hb_009188_010 Hb_068031_010 Hb_068031_010 Hb_000918_050--Hb_068031_010 Hb_000918_050--Hb_012404_010 Hb_000918_050--Hb_031691_010 Hb_000918_050--Hb_027890_010 Hb_000918_050--Hb_186440_010 Hb_186440_010--Hb_097889_010 Hb_186440_010--Hb_011537_090 Hb_186440_010--Hb_009188_010 Hb_007040_010 Hb_007040_010 Hb_008758_010--Hb_007040_010 Hb_004010_020 Hb_004010_020 Hb_008758_010--Hb_004010_020 Hb_000752_080 Hb_000752_080 Hb_008758_010--Hb_000752_080 Hb_008758_010--Hb_012404_010 Hb_008758_010--Hb_031691_010 Hb_008758_010--Hb_027890_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.42358 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.244191

CAGE analysis