Hb_012707_050

Information

Type -
Description -
Location Contig12707: 23757-25851
Sequence    

Annotation

kegg
ID rcu:RCOM_1341590
description hypothetical protein
nr
ID XP_002515127.1
description hypothetical protein RCOM_1341590 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMY8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08316: 20201-23286 , PASA_asmbl_08317: 23710-24238
cDNA
(Sanger)
(ID:Location)		 015_K19.ab1: 23710-24235 , 024_G03.ab1: 23988-24100 , 043_C15.ab1: 23710-24224 , 051_G08.ab1: 23711-24238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012707_050 0.0 - - hypothetical protein RCOM_1341590 [Ricinus communis]
2 Hb_000712_060 0.0918683762 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
3 Hb_000828_020 0.1096133962 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_001948_040 0.1118649541 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_009026_040 0.1155425891 - - pathogenesis-related family protein [Populus trichocarpa]
6 Hb_000221_200 0.1220715343 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
7 Hb_002570_020 0.1264498523 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_003237_040 0.1320771827 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_080238_010 0.1368076745 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_000679_070 0.1374584957 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
11 Hb_010647_010 0.1376619176 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
12 Hb_005120_010 0.1398385762 - - amino acid transporter, putative [Ricinus communis]
13 Hb_006925_010 0.1413524665 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_058620_040 0.1428001689 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
15 Hb_000329_160 0.1439694597 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
16 Hb_023732_020 0.1455862796 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
17 Hb_002249_180 0.1461411268 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_039562_010 0.1476868483 - - PREDICTED: protein SRG1-like [Jatropha curcas]
19 Hb_002173_080 0.1492143687 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_004057_050 0.1495311868 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012707_050 Hb_012707_050 Hb_000712_060 Hb_000712_060 Hb_012707_050--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_012707_050--Hb_000828_020 Hb_001948_040 Hb_001948_040 Hb_012707_050--Hb_001948_040 Hb_009026_040 Hb_009026_040 Hb_012707_050--Hb_009026_040 Hb_000221_200 Hb_000221_200 Hb_012707_050--Hb_000221_200 Hb_002570_020 Hb_002570_020 Hb_012707_050--Hb_002570_020 Hb_000712_060--Hb_000828_020 Hb_000712_060--Hb_001948_040 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_003073_020 Hb_003073_020 Hb_000712_060--Hb_003073_020 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_001948_040 Hb_000828_020--Hb_009026_040 Hb_000828_020--Hb_003073_020 Hb_002249_180 Hb_002249_180 Hb_000828_020--Hb_002249_180 Hb_001948_040--Hb_009026_040 Hb_001948_040--Hb_000221_200 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_001948_040--Hb_002249_180 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000221_200 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_000699_060 Hb_000699_060 Hb_000221_200--Hb_000699_060 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_002570_020--Hb_001948_040 Hb_002876_310 Hb_002876_310 Hb_002570_020--Hb_002876_310 Hb_002570_020--Hb_009026_040 Hb_000679_070 Hb_000679_070 Hb_002570_020--Hb_000679_070 Hb_002570_020--Hb_000712_060 Hb_002570_020--Hb_000828_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0341841 0.0405919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0980576 0 0 5.14569 0.149611

CAGE analysis