Hb_011004_070

Information

Type -
Description -
Location Contig11004: 36016-36618
Sequence    

Annotation

kegg
ID rcu:RCOM_1494490
description hypothetical protein
nr
ID XP_002516055.1
description hypothetical protein RCOM_1494490 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494490 PE=4 SV=1
Gene Ontology
ID GO:0004386
description hypothetical protein RCOM_1494490

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03100: 34794-36129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011004_070 0.0 - - hypothetical protein RCOM_1494490 [Ricinus communis]
2 Hb_054316_010 0.1369468721 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_000107_280 0.1438079694 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_008195_060 0.1476912701 transcription factor TF Family: NAC NAC transcription factor 018 [Jatropha curcas]
5 Hb_186458_010 0.1542467921 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
6 Hb_083963_010 0.1556988835 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
7 Hb_004313_010 0.1575974634 - - PREDICTED: patatin-like protein 1 [Prunus mume]
8 Hb_017110_030 0.1592969296 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
9 Hb_000815_050 0.1594842854 - - PREDICTED: expansin-A1 [Populus euphratica]
10 Hb_031012_030 0.1598992773 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
11 Hb_023582_030 0.1630402808 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000134_190 0.1632808582 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
13 Hb_000742_070 0.1648611821 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
14 Hb_000109_200 0.1702732675 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
15 Hb_004686_040 0.1731964982 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
16 Hb_000676_360 0.1760654284 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
17 Hb_005353_010 0.1820673891 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_000792_100 0.1835537122 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
19 Hb_000020_170 0.1835632669 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
20 Hb_000933_030 0.1842371921 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011004_070 Hb_011004_070 Hb_054316_010 Hb_054316_010 Hb_011004_070--Hb_054316_010 Hb_000107_280 Hb_000107_280 Hb_011004_070--Hb_000107_280 Hb_008195_060 Hb_008195_060 Hb_011004_070--Hb_008195_060 Hb_186458_010 Hb_186458_010 Hb_011004_070--Hb_186458_010 Hb_083963_010 Hb_083963_010 Hb_011004_070--Hb_083963_010 Hb_004313_010 Hb_004313_010 Hb_011004_070--Hb_004313_010 Hb_000134_190 Hb_000134_190 Hb_054316_010--Hb_000134_190 Hb_023582_030 Hb_023582_030 Hb_054316_010--Hb_023582_030 Hb_004686_040 Hb_004686_040 Hb_054316_010--Hb_004686_040 Hb_054316_010--Hb_186458_010 Hb_000742_070 Hb_000742_070 Hb_054316_010--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_054316_010--Hb_017110_030 Hb_000107_280--Hb_004313_010 Hb_031012_030 Hb_031012_030 Hb_000107_280--Hb_031012_030 Hb_000107_280--Hb_186458_010 Hb_000107_280--Hb_083963_010 Hb_005353_010 Hb_005353_010 Hb_000107_280--Hb_005353_010 Hb_000109_200 Hb_000109_200 Hb_000107_280--Hb_000109_200 Hb_007044_240 Hb_007044_240 Hb_008195_060--Hb_007044_240 Hb_000556_060 Hb_000556_060 Hb_008195_060--Hb_000556_060 Hb_009847_010 Hb_009847_010 Hb_008195_060--Hb_009847_010 Hb_024071_030 Hb_024071_030 Hb_008195_060--Hb_024071_030 Hb_000847_090 Hb_000847_090 Hb_008195_060--Hb_000847_090 Hb_001140_050 Hb_001140_050 Hb_008195_060--Hb_001140_050 Hb_186458_010--Hb_017110_030 Hb_186458_010--Hb_004313_010 Hb_186458_010--Hb_083963_010 Hb_186458_010--Hb_031012_030 Hb_186458_010--Hb_023582_030 Hb_186458_010--Hb_000742_070 Hb_083963_010--Hb_017110_030 Hb_083963_010--Hb_000742_070 Hb_083963_010--Hb_023582_030 Hb_083963_010--Hb_000134_190 Hb_083963_010--Hb_004313_010 Hb_004313_010--Hb_031012_030 Hb_004313_010--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_004313_010--Hb_000676_360 Hb_004313_010--Hb_005353_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.957817 1.46777 0.0405578 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10023 0 0 0 0.457697

CAGE analysis