Hb_009485_010

Information

Type -
Description -
Location Contig9485: 44043-48115
Sequence    

Annotation

kegg
ID vvi:100260982
description uncharacterized LOC100260982
nr
ID XP_012080920.1
description PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067K2T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15245 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at3g12360-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63334: 47007-47304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009485_010 0.0 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
2 Hb_000069_660 0.1479368053 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
3 Hb_168905_010 0.1512883702 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
4 Hb_000479_080 0.1822314658 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_008931_010 0.1866638873 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
6 Hb_000530_070 0.1877358776 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
7 Hb_002784_120 0.1905013854 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_001846_070 0.1971167161 - - PREDICTED: fructokinase-1 [Jatropha curcas]
9 Hb_000802_100 0.2008708167 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
10 Hb_000084_320 0.2011338658 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
11 Hb_000836_130 0.2012746419 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
12 Hb_005539_240 0.2026621487 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
13 Hb_000367_100 0.2028988086 - - BnaA05g32070D [Brassica napus]
14 Hb_003052_060 0.2037457394 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
15 Hb_011671_390 0.2038082618 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_001040_110 0.203887181 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
17 Hb_003581_220 0.2046748143 - - unnamed protein product [Vitis vinifera]
18 Hb_009005_050 0.2057712483 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
19 Hb_002876_120 0.2076569408 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
20 Hb_000210_220 0.2109464244 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]

Gene co-expression network

sample Hb_009485_010 Hb_009485_010 Hb_000069_660 Hb_000069_660 Hb_009485_010--Hb_000069_660 Hb_168905_010 Hb_168905_010 Hb_009485_010--Hb_168905_010 Hb_000479_080 Hb_000479_080 Hb_009485_010--Hb_000479_080 Hb_008931_010 Hb_008931_010 Hb_009485_010--Hb_008931_010 Hb_000530_070 Hb_000530_070 Hb_009485_010--Hb_000530_070 Hb_002784_120 Hb_002784_120 Hb_009485_010--Hb_002784_120 Hb_000069_660--Hb_000530_070 Hb_003581_220 Hb_003581_220 Hb_000069_660--Hb_003581_220 Hb_001846_070 Hb_001846_070 Hb_000069_660--Hb_001846_070 Hb_002182_030 Hb_002182_030 Hb_000069_660--Hb_002182_030 Hb_001157_010 Hb_001157_010 Hb_000069_660--Hb_001157_010 Hb_007594_120 Hb_007594_120 Hb_000069_660--Hb_007594_120 Hb_021443_080 Hb_021443_080 Hb_168905_010--Hb_021443_080 Hb_001218_040 Hb_001218_040 Hb_168905_010--Hb_001218_040 Hb_011671_390 Hb_011671_390 Hb_168905_010--Hb_011671_390 Hb_000997_360 Hb_000997_360 Hb_168905_010--Hb_000997_360 Hb_001616_030 Hb_001616_030 Hb_168905_010--Hb_001616_030 Hb_001153_020 Hb_001153_020 Hb_168905_010--Hb_001153_020 Hb_001135_210 Hb_001135_210 Hb_000479_080--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000479_080--Hb_000836_130 Hb_000479_080--Hb_000069_660 Hb_005839_110 Hb_005839_110 Hb_000479_080--Hb_005839_110 Hb_000784_030 Hb_000784_030 Hb_000479_080--Hb_000784_030 Hb_000479_080--Hb_002182_030 Hb_005539_240 Hb_005539_240 Hb_008931_010--Hb_005539_240 Hb_005505_020 Hb_005505_020 Hb_008931_010--Hb_005505_020 Hb_002759_240 Hb_002759_240 Hb_008931_010--Hb_002759_240 Hb_008931_010--Hb_001846_070 Hb_061802_010 Hb_061802_010 Hb_008931_010--Hb_061802_010 Hb_002182_090 Hb_002182_090 Hb_008931_010--Hb_002182_090 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_000530_070--Hb_001157_010 Hb_000530_070--Hb_003581_220 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020 Hb_012505_010 Hb_012505_010 Hb_002784_120--Hb_012505_010 Hb_000302_220 Hb_000302_220 Hb_002784_120--Hb_000302_220 Hb_001545_100 Hb_001545_100 Hb_002784_120--Hb_001545_100 Hb_138585_060 Hb_138585_060 Hb_002784_120--Hb_138585_060 Hb_000975_300 Hb_000975_300 Hb_002784_120--Hb_000975_300 Hb_000127_110 Hb_000127_110 Hb_002784_120--Hb_000127_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299852 0.0240692 0.365977 0.110236 0.485266 0.0844124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.798617 1.57867 1.66222 0.10963 0.747719

CAGE analysis