Hb_007645_010

Information

Type -
Description -
Location Contig7645: 4765-6492
Sequence    

Annotation

kegg
ID pmum:18668093
description ndhE, CP95_p013; NADH-plastoquinone oxidoreductase subunit 4L
nr
ID AFU96706.1
description NdhE, partial (chloroplast) [Podocalyx loranthoides]
swissprot
ID Q09WW6
description NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Morus indica GN=ndhE PE=3 SV=1
trembl
ID D3WDD0
description NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Bulnesia arborea GN=ndhE PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh-plastoquinone oxidoreductase subunit 4l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007645_010 0.0 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]
2 Hb_002835_420 0.0752754553 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
3 Hb_106850_010 0.0804882114 - - photosystem II protein D2 [Lactuca sativa]
4 Hb_000938_050 0.0807916114 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
5 Hb_154980_010 0.081433483 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
6 Hb_006302_050 0.08561098 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
7 Hb_104509_010 0.0859740673 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
8 Hb_126973_010 0.0869344048 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
9 Hb_001627_070 0.090760152 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
10 Hb_002704_090 0.0908642942 - - cytochrome P450, putative [Ricinus communis]
11 Hb_031194_030 0.0912754349 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
12 Hb_000574_080 0.0914384313 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_012184_020 0.0914657119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001570_030 0.0916143218 - - hypothetical protein JCGZ_13485 [Jatropha curcas]
15 Hb_002395_010 0.0921359241 - - -
16 Hb_131816_010 0.0922595296 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_005622_090 0.0925522338 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
18 Hb_005018_050 0.0932430983 - - PREDICTED: licodione synthase-like [Jatropha curcas]
19 Hb_003144_020 0.0938662293 - - (R)-limonene synthase, putative [Ricinus communis]
20 Hb_003407_050 0.0955060487 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007645_010 Hb_007645_010 Hb_002835_420 Hb_002835_420 Hb_007645_010--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_007645_010--Hb_106850_010 Hb_000938_050 Hb_000938_050 Hb_007645_010--Hb_000938_050 Hb_154980_010 Hb_154980_010 Hb_007645_010--Hb_154980_010 Hb_006302_050 Hb_006302_050 Hb_007645_010--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_007645_010--Hb_104509_010 Hb_002835_420--Hb_154980_010 Hb_002835_420--Hb_106850_010 Hb_002835_420--Hb_104509_010 Hb_031194_030 Hb_031194_030 Hb_002835_420--Hb_031194_030 Hb_126973_010 Hb_126973_010 Hb_002835_420--Hb_126973_010 Hb_002835_420--Hb_006302_050 Hb_106850_010--Hb_154980_010 Hb_106850_010--Hb_104509_010 Hb_106850_010--Hb_006302_050 Hb_106850_010--Hb_126973_010 Hb_003144_020 Hb_003144_020 Hb_106850_010--Hb_003144_020 Hb_005018_050 Hb_005018_050 Hb_000938_050--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_000938_050--Hb_003407_050 Hb_000938_050--Hb_031194_030 Hb_003120_090 Hb_003120_090 Hb_000938_050--Hb_003120_090 Hb_002704_090 Hb_002704_090 Hb_000938_050--Hb_002704_090 Hb_000938_050--Hb_002835_420 Hb_154980_010--Hb_104509_010 Hb_154980_010--Hb_006302_050 Hb_154980_010--Hb_126973_010 Hb_154980_010--Hb_031194_030 Hb_006302_050--Hb_104509_010 Hb_005914_030 Hb_005914_030 Hb_006302_050--Hb_005914_030 Hb_006302_050--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_006302_050--Hb_131816_010 Hb_000959_380 Hb_000959_380 Hb_006302_050--Hb_000959_380 Hb_104509_010--Hb_003144_020 Hb_104509_010--Hb_131816_010 Hb_104509_010--Hb_005914_030 Hb_005224_020 Hb_005224_020 Hb_104509_010--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.278432 0.0572039 0.0945158 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.024147 10.2922

CAGE analysis