Hb_007547_030

Information

Type -
Description -
Location Contig7547: 9288-10258
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10930g
description POPTRDRAFT_762584; vacuolar sorting receptor family protein
nr
ID XP_002309184.1
description vacuolar sorting receptor family protein [Populus trichocarpa]
swissprot
ID O22925
description Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1
trembl
ID B9HDJ2
description Vacuolar sorting receptor family protein OS=Populus trichocarpa GN=POPTR_0006s10930g PE=4 SV=1
Gene Ontology
ID GO:0005509
description vacuolar-sorting receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007547_030 0.0 - - vacuolar sorting receptor family protein [Populus trichocarpa]
2 Hb_000479_120 0.3047739164 transcription factor TF Family: FAR1 FAR1-related sequence 5 [Theobroma cacao]
3 Hb_000590_030 0.307509695 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000099_220 0.3215765985 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_141838_010 0.3234661573 - - -
6 Hb_007547_040 0.3244706337 - - Auxin response factor 9 [Aegilops tauschii]
7 Hb_001364_020 0.3301733756 - - -
8 Hb_005867_010 0.3303191681 - - -
9 Hb_004650_080 0.3318655315 - - -
10 Hb_000038_160 0.3333542616 - - putative gag protein [Coffea canephora]
11 Hb_140049_070 0.3334914334 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002805_320 0.3340427107 - - -
13 Hb_002163_060 0.3359998773 - - -
14 Hb_152587_010 0.341064617 - - -
15 Hb_000300_340 0.3510429618 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
16 Hb_027393_020 0.3573243565 - - -
17 Hb_001329_260 0.3575429471 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
18 Hb_000008_050 0.357985204 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
19 Hb_002493_030 0.3603272744 - - -
20 Hb_003768_040 0.360331175 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007547_030 Hb_007547_030 Hb_000479_120 Hb_000479_120 Hb_007547_030--Hb_000479_120 Hb_000590_030 Hb_000590_030 Hb_007547_030--Hb_000590_030 Hb_000099_220 Hb_000099_220 Hb_007547_030--Hb_000099_220 Hb_141838_010 Hb_141838_010 Hb_007547_030--Hb_141838_010 Hb_007547_040 Hb_007547_040 Hb_007547_030--Hb_007547_040 Hb_001364_020 Hb_001364_020 Hb_007547_030--Hb_001364_020 Hb_000362_240 Hb_000362_240 Hb_000479_120--Hb_000362_240 Hb_022693_150 Hb_022693_150 Hb_000479_120--Hb_022693_150 Hb_004650_080 Hb_004650_080 Hb_000479_120--Hb_004650_080 Hb_002983_100 Hb_002983_100 Hb_000479_120--Hb_002983_100 Hb_000008_050 Hb_000008_050 Hb_000479_120--Hb_000008_050 Hb_168978_040 Hb_168978_040 Hb_000479_120--Hb_168978_040 Hb_000590_030--Hb_000099_220 Hb_011063_020 Hb_011063_020 Hb_000590_030--Hb_011063_020 Hb_024404_010 Hb_024404_010 Hb_000590_030--Hb_024404_010 Hb_000160_030 Hb_000160_030 Hb_000590_030--Hb_000160_030 Hb_002450_110 Hb_002450_110 Hb_000590_030--Hb_002450_110 Hb_003768_040 Hb_003768_040 Hb_000590_030--Hb_003768_040 Hb_000099_220--Hb_003768_040 Hb_000857_050 Hb_000857_050 Hb_000099_220--Hb_000857_050 Hb_064885_020 Hb_064885_020 Hb_000099_220--Hb_064885_020 Hb_000099_220--Hb_002450_110 Hb_104812_030 Hb_104812_030 Hb_000099_220--Hb_104812_030 Hb_011515_030 Hb_011515_030 Hb_141838_010--Hb_011515_030 Hb_008147_030 Hb_008147_030 Hb_141838_010--Hb_008147_030 Hb_141838_010--Hb_002983_100 Hb_003320_030 Hb_003320_030 Hb_141838_010--Hb_003320_030 Hb_004092_010 Hb_004092_010 Hb_141838_010--Hb_004092_010 Hb_002903_120 Hb_002903_120 Hb_141838_010--Hb_002903_120 Hb_105427_010 Hb_105427_010 Hb_007547_040--Hb_105427_010 Hb_007547_040--Hb_104812_030 Hb_007547_040--Hb_002450_110 Hb_007547_040--Hb_000099_220 Hb_007765_060 Hb_007765_060 Hb_007547_040--Hb_007765_060 Hb_000544_040 Hb_000544_040 Hb_007547_040--Hb_000544_040 Hb_005867_010 Hb_005867_010 Hb_001364_020--Hb_005867_010 Hb_000038_160 Hb_000038_160 Hb_001364_020--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_001364_020--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_001364_020--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_001364_020--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_001364_020--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54359 0 0.0893662 0.199136 3.1443 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.895761 0 0

CAGE analysis