Hb_006869_030

Information

Type -
Description -
Location Contig6869: 32688-38785
Sequence    

Annotation

kegg
ID rcu:RCOM_0740270
description ATP binding protein, putative
nr
ID XP_002525488.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8CFE4
description SCY1-like protein 2 OS=Mus musculus GN=Scyl2 PE=1 SV=1
trembl
ID B9SHL9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0740270 PE=4 SV=1
Gene Ontology
ID GO:0005515
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54113: 36953-37159 , PASA_asmbl_54114: 37218-38495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006869_030 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000318_100 0.13734126 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
3 Hb_000590_100 0.1409745638 - - -
4 Hb_001832_010 0.1506523676 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
5 Hb_000506_120 0.1568662005 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
6 Hb_000135_060 0.1630819441 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
7 Hb_004429_150 0.1636469764 - - -
8 Hb_000373_120 0.1655028441 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
9 Hb_001688_020 0.1670787095 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
10 Hb_008648_010 0.1700091017 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
11 Hb_009658_020 0.1703157513 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
12 Hb_001360_050 0.1703847495 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_004117_010 0.1725274386 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
14 Hb_000317_410 0.1733116515 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
15 Hb_001545_080 0.1750814872 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
16 Hb_009421_040 0.1754224339 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
17 Hb_000841_020 0.1755070312 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
18 Hb_001824_010 0.1759197668 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
19 Hb_005736_060 0.1772078499 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
20 Hb_032258_030 0.1773864218 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]

Gene co-expression network

sample Hb_006869_030 Hb_006869_030 Hb_000318_100 Hb_000318_100 Hb_006869_030--Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_006869_030--Hb_000590_100 Hb_001832_010 Hb_001832_010 Hb_006869_030--Hb_001832_010 Hb_000506_120 Hb_000506_120 Hb_006869_030--Hb_000506_120 Hb_000135_060 Hb_000135_060 Hb_006869_030--Hb_000135_060 Hb_004429_150 Hb_004429_150 Hb_006869_030--Hb_004429_150 Hb_000318_100--Hb_000590_100 Hb_020400_050 Hb_020400_050 Hb_000318_100--Hb_020400_050 Hb_000318_100--Hb_000506_120 Hb_001824_010 Hb_001824_010 Hb_000318_100--Hb_001824_010 Hb_000317_410 Hb_000317_410 Hb_000318_100--Hb_000317_410 Hb_008699_020 Hb_008699_020 Hb_000318_100--Hb_008699_020 Hb_154826_010 Hb_154826_010 Hb_000590_100--Hb_154826_010 Hb_000590_100--Hb_000135_060 Hb_000590_100--Hb_001824_010 Hb_001653_020 Hb_001653_020 Hb_000590_100--Hb_001653_020 Hb_002061_040 Hb_002061_040 Hb_000590_100--Hb_002061_040 Hb_001833_110 Hb_001833_110 Hb_001832_010--Hb_001833_110 Hb_015807_040 Hb_015807_040 Hb_001832_010--Hb_015807_040 Hb_000668_040 Hb_000668_040 Hb_001832_010--Hb_000668_040 Hb_004724_340 Hb_004724_340 Hb_001832_010--Hb_004724_340 Hb_001360_050 Hb_001360_050 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140 Hb_000506_120--Hb_020400_050 Hb_002851_020 Hb_002851_020 Hb_000506_120--Hb_002851_020 Hb_000987_120 Hb_000987_120 Hb_000506_120--Hb_000987_120 Hb_000506_120--Hb_008699_020 Hb_000030_290 Hb_000030_290 Hb_000506_120--Hb_000030_290 Hb_005736_060 Hb_005736_060 Hb_000135_060--Hb_005736_060 Hb_000135_060--Hb_015807_040 Hb_000135_060--Hb_002061_040 Hb_000331_450 Hb_000331_450 Hb_000135_060--Hb_000331_450 Hb_002284_240 Hb_002284_240 Hb_000135_060--Hb_002284_240 Hb_000135_060--Hb_004724_340 Hb_005000_070 Hb_005000_070 Hb_004429_150--Hb_005000_070 Hb_000193_200 Hb_000193_200 Hb_004429_150--Hb_000193_200 Hb_000622_040 Hb_000622_040 Hb_004429_150--Hb_000622_040 Hb_002918_200 Hb_002918_200 Hb_004429_150--Hb_002918_200 Hb_010080_090 Hb_010080_090 Hb_004429_150--Hb_010080_090 Hb_001083_020 Hb_001083_020 Hb_004429_150--Hb_001083_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49091 0.989398 0.634863 1.83514 6.18383 2.57807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5051 8.0602 3.60341 6.10331 3.3238

CAGE analysis