Hb_004880_090

Information

Type -
Description -
Location Contig4880: 150837-154063
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0000166
description hypothetical protein POPTR_0011s01952g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_090 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_185274_010 0.1771631506 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
3 Hb_003032_090 0.1856749055 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
4 Hb_162094_010 0.1861455287 - - RNA polymerase alpha subunit [Hevea brasiliensis]
5 Hb_001081_050 0.1891458292 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
6 Hb_003963_040 0.1922819537 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
7 Hb_003693_060 0.1957004749 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
8 Hb_103465_010 0.2049083644 - - RNA polymerase beta subunit [Hevea brasiliensis]
9 Hb_007201_010 0.2055522304 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
10 Hb_027638_010 0.2056953866 - - Protein KES1, putative [Ricinus communis]
11 Hb_028227_050 0.2075008168 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
12 Hb_000156_240 0.2077341716 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
13 Hb_087797_010 0.2090219542 - - kinase, putative [Ricinus communis]
14 Hb_088080_040 0.211461445 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
15 Hb_003944_010 0.2123719461 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
16 Hb_031194_010 0.2126952037 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
17 Hb_062192_010 0.2142140192 - - -
18 Hb_005399_040 0.215783588 - - RNA polymerase beta subunit [Hevea brasiliensis]
19 Hb_002027_420 0.2206826402 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
20 Hb_041813_090 0.2212287779 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004880_090 Hb_004880_090 Hb_185274_010 Hb_185274_010 Hb_004880_090--Hb_185274_010 Hb_003032_090 Hb_003032_090 Hb_004880_090--Hb_003032_090 Hb_162094_010 Hb_162094_010 Hb_004880_090--Hb_162094_010 Hb_001081_050 Hb_001081_050 Hb_004880_090--Hb_001081_050 Hb_003963_040 Hb_003963_040 Hb_004880_090--Hb_003963_040 Hb_003693_060 Hb_003693_060 Hb_004880_090--Hb_003693_060 Hb_005399_050 Hb_005399_050 Hb_185274_010--Hb_005399_050 Hb_005399_040 Hb_005399_040 Hb_185274_010--Hb_005399_040 Hb_000992_090 Hb_000992_090 Hb_185274_010--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_185274_010--Hb_106552_030 Hb_000261_390 Hb_000261_390 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390 Hb_001338_150 Hb_001338_150 Hb_003032_090--Hb_001338_150 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_162094_010--Hb_003963_040 Hb_162094_010--Hb_001338_150 Hb_162094_010--Hb_001338_160 Hb_162094_010--Hb_003032_090 Hb_001155_020 Hb_001155_020 Hb_162094_010--Hb_001155_020 Hb_162094_010--Hb_003693_060 Hb_184798_060 Hb_184798_060 Hb_001081_050--Hb_184798_060 Hb_027638_010 Hb_027638_010 Hb_001081_050--Hb_027638_010 Hb_000208_220 Hb_000208_220 Hb_001081_050--Hb_000208_220 Hb_003144_010 Hb_003144_010 Hb_001081_050--Hb_003144_010 Hb_161881_010 Hb_161881_010 Hb_001081_050--Hb_161881_010 Hb_004407_030 Hb_004407_030 Hb_001081_050--Hb_004407_030 Hb_003963_040--Hb_001338_150 Hb_003963_040--Hb_001338_160 Hb_003963_040--Hb_005399_040 Hb_003963_040--Hb_000156_240 Hb_003963_040--Hb_005399_050 Hb_031194_010 Hb_031194_010 Hb_003693_060--Hb_031194_010 Hb_088080_040 Hb_088080_040 Hb_003693_060--Hb_088080_040 Hb_103465_010 Hb_103465_010 Hb_003693_060--Hb_103465_010 Hb_004811_010 Hb_004811_010 Hb_003693_060--Hb_004811_010 Hb_003693_060--Hb_000156_240 Hb_003693_060--Hb_003963_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00963808 0.0159065 0.0289871 0.00739054 0.0096512 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.18223

CAGE analysis