Hb_004525_090

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig4525: 48880-49886
Sequence    

Annotation

kegg
ID rcu:RCOM_0536580
description GATA transcription factor, putative
nr
ID XP_002521591.1
description GATA transcription factor, putative [Ricinus communis]
swissprot
ID Q8LC79
description GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2
trembl
ID B9S6H2
description GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0536580 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43230: 49643-49997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_090 0.0 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
2 Hb_001545_020 0.0797435097 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
3 Hb_002221_060 0.1094378008 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
4 Hb_000003_380 0.1105405262 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010883_170 0.1128549357 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
6 Hb_000230_300 0.1170924446 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
7 Hb_003376_020 0.1187580405 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004202_020 0.1214952513 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011618_110 0.121714238 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
10 Hb_012653_050 0.1220721461 - - hypothetical protein RCOM_0460020 [Ricinus communis]
11 Hb_000103_200 0.1225144701 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_004137_040 0.1229510376 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
13 Hb_005762_010 0.1256078846 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
14 Hb_000483_450 0.1256865971 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
15 Hb_054316_010 0.1299022505 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_000103_450 0.1302185107 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
17 Hb_001956_130 0.1316092485 - - catalytic, putative [Ricinus communis]
18 Hb_004223_060 0.1318781577 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
19 Hb_000003_370 0.1337473133 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
20 Hb_000103_220 0.1346818661 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_090 Hb_004525_090 Hb_001545_020 Hb_001545_020 Hb_004525_090--Hb_001545_020 Hb_002221_060 Hb_002221_060 Hb_004525_090--Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_004525_090--Hb_000003_380 Hb_010883_170 Hb_010883_170 Hb_004525_090--Hb_010883_170 Hb_000230_300 Hb_000230_300 Hb_004525_090--Hb_000230_300 Hb_003376_020 Hb_003376_020 Hb_004525_090--Hb_003376_020 Hb_004137_040 Hb_004137_040 Hb_001545_020--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_001545_020--Hb_000028_190 Hb_005762_010 Hb_005762_010 Hb_001545_020--Hb_005762_010 Hb_000483_450 Hb_000483_450 Hb_001545_020--Hb_000483_450 Hb_004202_020 Hb_004202_020 Hb_001545_020--Hb_004202_020 Hb_002221_060--Hb_000003_380 Hb_002221_060--Hb_000230_300 Hb_002221_060--Hb_004137_040 Hb_002221_060--Hb_000483_450 Hb_000103_200 Hb_000103_200 Hb_002221_060--Hb_000103_200 Hb_000928_030 Hb_000928_030 Hb_002221_060--Hb_000928_030 Hb_000003_380--Hb_000230_300 Hb_000003_380--Hb_004137_040 Hb_000003_380--Hb_000483_450 Hb_000003_380--Hb_003376_020 Hb_000003_380--Hb_000928_030 Hb_000816_140 Hb_000816_140 Hb_010883_170--Hb_000816_140 Hb_012653_050 Hb_012653_050 Hb_010883_170--Hb_012653_050 Hb_010883_170--Hb_004202_020 Hb_010883_170--Hb_002221_060 Hb_006922_120 Hb_006922_120 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010 Hb_000230_300--Hb_004137_040 Hb_000230_300--Hb_005762_010 Hb_000230_300--Hb_000103_200 Hb_000230_300--Hb_000028_190 Hb_040852_010 Hb_040852_010 Hb_003376_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_003376_020--Hb_003894_110 Hb_152910_050 Hb_152910_050 Hb_003376_020--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003376_020--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003376_020--Hb_000134_130 Hb_000103_220 Hb_000103_220 Hb_003376_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0328609 0.432656 0.712057 0.0326006 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.351315

CAGE analysis